Full information on isolate SNUC 5594 (id:109)

Provenance/primary metadata

id
109
isolate
SNUC 5594
aliases
GCA_003041855.1; PZGV01
country
Canada
continent
North America
region
Quebec
year
2007
sex
female
disease
unknown
source
animal
detailed source
Bos taurus, herd 321
bioproject accession
PRJNA342349 www.ebi.ac.uk
biosample accession
SAMN06173142 www.ebi.ac.uk
rMLST database accession
287940
sender
Keith Jolley, University of Oxford, UK
curator
Michael Szostak, Institute of Microbiology, Department of Pathobiology, University of Veterinary Medicine Vienna, Veterinaerplatz 1, A-1210 Vienna, Austria (E-mail: michael.szostak@vetmeduni.ac.at)
update history
6 updates show details
date entered
2020-11-13
datestamp
2021-02-12

Sequence bin

contigs
279
total length
2,809,403 bp
max length
126,062 bp
mean length
10,070 bp
N50
21,939
L50
30
N90
5,438
L90
125
N95
3,019
L95
161
%GC
32.66
Ns
0
gaps
0
loci tagged
7

Show sequence bin

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Mammaliicoccus sciuri Bacillota > Bacilli > Bacillales > Staphylococcaceae > Mammaliicoccus > Mammaliicoccus sciuri 100%

Analysis performed: 2023-03-10

Schemes and loci

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