Full information on isolate HA322 (id:24)

Provenance/primary metadata

id
24
isolate
HA322
source
Sheep
country
Australia
continent
Oceania
region
Hamilton
location
Victoria
collection institute
Monash
year
2014
disease state
footrot
sample
swab
phenotype
virulent
serogroup by sequence
F
ENA accession
ERR506944 www.ebi.ac.uk
sender
Adam Blanchard, University of Nottingham
curator
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update history
5 updates show details
date entered
2017-09-05
datestamp
2018-07-19

Publications (2)

  • Blanchard AM, Jolley KA, Maiden MCJ, Coffey TJ, Maboni G, Staley CE, Bollard NJ, Warry A, Emes RD, Davies PL, Tötemeyer S (2018). The Applied Development of a Tiered Multilocus Sequence Typing (MLST) Scheme forDichelobacter nodosus. Front Microbiol 9:551
  • Kennan RM, Gilhuus M, Frosth S, Seemann T, Dhungyel OP, Whittington RJ, Boyce JD, Powell DR, Aspán A, Jørgensen HJ, Bulach DM, Rood JI (2014). Genomic evidence for a globally distributed, bimodal population in the ovine footrot pathogen Dichelobacter nodosus. MBio 5:e01821-14

Sequence bin

contigs
27
total length
1,445,781 bp
max length
431,455 bp
mean length
53,548 bp
N50 contig number
2
N50 length (L50)
380,927
N90 contig number
7
N90 length (L90)
40,802
N95 contig number
9
N95 length (L95)
15,208
loci tagged
1,200

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