Full information on isolate VCS1001 (id:23)

Provenance/primary metadata

id
23
isolate
VCS1001
source
Sheep
country
Australia
continent
Oceania
region
Yass
location
New South Wales
collection institute
Monash
collected year
1974
year
1974
disease state
footrot
sample
swab
phenotype
virulent
serogroup by sequence
A
ENA accession
ERR506943 www.ebi.ac.uk
sender
Adam Blanchard, University of Nottingham
curator
Auto Tagger
update history
4 updates show details
date entered
2017-09-05
datestamp
2018-07-19

Publications (2)

  • Blanchard AM, Jolley KA, Maiden MCJ, Coffey TJ, Maboni G, Staley CE, Bollard NJ, Warry A, Emes RD, Davies PL, Tötemeyer S (2018). The Applied Development of a Tiered Multilocus Sequence Typing (MLST) Scheme forDichelobacter nodosus. Front Microbiol 9:551
  • Kennan RM, Gilhuus M, Frosth S, Seemann T, Dhungyel OP, Whittington RJ, Boyce JD, Powell DR, Aspán A, Jørgensen HJ, Bulach DM, Rood JI (2014). Genomic evidence for a globally distributed, bimodal population in the ovine footrot pathogen Dichelobacter nodosus. MBio 5:e01821-14

Sequence bin

contigs
25
total length
1,370,917 bp
max length
280,523 bp
mean length
54,837 bp
N50 contig number
4
N50 length (L50)
151,929
N90 contig number
8
N90 length (L90)
75,556
N95 contig number
10
N95 length (L95)
27,915
loci tagged
1,308

Show sequence bin

Schemes and loci

Navigate and select schemes within tree to display allele designations

Tools

Export:
Analysis: