Full information on isolate VCS1172 (id:22)
Provenance/primary metadata
- id
- 22
- isolate
- VCS1172
- source
- Sheep
- country
- Australia
- continent
- Oceania
- region
- Moss Vale
- location
- New South Wales
- collection institute
- Monash
- collected year
- 1978
- year
- 1978
- disease state
- footrot
- sample
- swab
- phenotype
- virulent
- serogroup by sequence
- D
- ENA accession
- ERR506942 www.ebi.ac.uk
- sender
- Adam Blanchard, University of Nottingham
- curator
- Auto Tagger
- update history
- 4 updates show details
- date entered
- 2017-09-05
- datestamp
- 2018-07-19
Publications (2)
- Blanchard AM, Jolley KA, Maiden MCJ, Coffey TJ, Maboni G, Staley CE, Bollard NJ, Warry A, Emes RD, Davies PL, Tötemeyer S (2018). The Applied Development of a Tiered Multilocus Sequence Typing (MLST) Scheme forDichelobacter nodosus. Front Microbiol 9:551
- Kennan RM, Gilhuus M, Frosth S, Seemann T, Dhungyel OP, Whittington RJ, Boyce JD, Powell DR, Aspán A, Jørgensen HJ, Bulach DM, Rood JI (2014). Genomic evidence for a globally distributed, bimodal population in the ovine footrot pathogen Dichelobacter nodosus. MBio 5:e01821-14
Sequence bin
- contigs
- 399
- total length
- 1,342,552 bp
- max length
- 29,451 bp
- mean length
- 3,365 bp
- N50 contig number
- 59
- N50 length (L50)
- 6,381
- N90 contig number
- 231
- N90 length (L90)
- 1,559
- N95 contig number
- 285
- N95 length (L95)
- 957
- loci tagged
- 720
Schemes and loci
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