Full information on isolate JIR1204 (id:21)

Provenance/primary metadata

id
21
isolate
JIR1204
source
Sheep
country
Australia
continent
Oceania
location
New South Wales
collection institute
Monash
year
2014
disease state
footrot
sample
swab
phenotype
benign
serogroup by sequence
I
ENA accession
ERR506941 www.ebi.ac.uk
sender
Adam Blanchard, University of Nottingham
curator
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update history
5 updates show details
date entered
2017-09-05
datestamp
2018-07-19

Publications (2)

  • Blanchard AM, Jolley KA, Maiden MCJ, Coffey TJ, Maboni G, Staley CE, Bollard NJ, Warry A, Emes RD, Davies PL, Tötemeyer S (2018). The Applied Development of a Tiered Multilocus Sequence Typing (MLST) Scheme forDichelobacter nodosus. Front Microbiol 9:551
  • Kennan RM, Gilhuus M, Frosth S, Seemann T, Dhungyel OP, Whittington RJ, Boyce JD, Powell DR, Aspán A, Jørgensen HJ, Bulach DM, Rood JI (2014). Genomic evidence for a globally distributed, bimodal population in the ovine footrot pathogen Dichelobacter nodosus. MBio 5:e01821-14

Sequence bin

contigs
22
total length
1,325,406 bp
max length
220,455 bp
mean length
60,246 bp
N50 contig number
5
N50 length (L50)
127,515
N90 contig number
11
N90 length (L90)
42,080
N95 contig number
13
N95 length (L95)
25,865
loci tagged
746

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