Full information on isolate 12BKT066771 (id:14)

Provenance/primary metadata

id
14
isolate
12BKT066771
source
Goat
country
Sweden
continent
Europe
location
Örebro län
collection institute
SVA
collected year
2012
year
2012
disease state
footrot
sample
swab
phenotype
benign
serogroup by sequence
B
ENA accession
ERR506934 www.ebi.ac.uk
sender
Adam Blanchard, University of Nottingham
curator
Auto Tagger
update history
5 updates show details
date entered
2017-09-05
datestamp
2018-07-19

Publications (2)

  • Blanchard AM, Jolley KA, Maiden MCJ, Coffey TJ, Maboni G, Staley CE, Bollard NJ, Warry A, Emes RD, Davies PL, Tötemeyer S (2018). The Applied Development of a Tiered Multilocus Sequence Typing (MLST) Scheme forDichelobacter nodosus. Front Microbiol 9:551
  • Kennan RM, Gilhuus M, Frosth S, Seemann T, Dhungyel OP, Whittington RJ, Boyce JD, Powell DR, Aspán A, Jørgensen HJ, Bulach DM, Rood JI (2014). Genomic evidence for a globally distributed, bimodal population in the ovine footrot pathogen Dichelobacter nodosus. MBio 5:e01821-14

Sequence bin

contigs
62
total length
1,332,759 bp
max length
158,660 bp
mean length
21,497 bp
N50 contig number
7
N50 length (L50)
60,845
N90 contig number
22
N90 length (L90)
15,828
N95 contig number
27
N95 length (L95)
10,497
loci tagged
723

Show sequence bin

Schemes and loci

Navigate and select schemes within tree to display allele designations

Tools

Export:
Analysis: