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Full information on isolate FQD190404 (id:1747)

Provenance/meta data

id
1747
isolate
FQD190404
alias
FQD
country
China
continent
Asia
sample date
2019-04-04
binary toxin
-
genotype
A+B+
source 1
human
clinical data 1
non-outbreak
comments
a new sequence type
sender
Yanzi Zhou, The First Affiliated Hospital of Medical School, ZheJiang University
curator
Auto Tagger
update history
2 updates show details
date entered
2020-02-12
datestamp
2020-02-12

Publication (1)

Sequence bin

contigs
846
total length
4,391,532 bp
max length
464,335 bp
mean length
5,191 bp
N50 contig number
7
N50 length (L50)
259,594
N90 contig number
16
N90 length (L90)
97,793
N95 contig number
27
N95 length (L95)
1,575
loci tagged
27
detailed breakdown
Display

Schemes and loci

MLST

adk
1  S 
atpA
1  S 
dxr
2  S 
glyA
1  S 
recA
 
sodA
1  S 
tpi
1  S 
ST
Not defined
mlst clade
Not defined

cwp cluster genes

CD2790
5  S 
cwp2
6  S 
cwp66
22  S 
cwp84
 
secA2
5  S 
slpA
34  S 

Loci not in schemes

CD07810_1
17  S 
CD11480_3
32  S 
CD12290_2 
4  S 
CD_RS02615_5 
2  S 
CDspoVD_4 
5  S 
cdtA
3  S 
cdtB
2  S 
coa
1  S 
ermB
1  S 
gyrA
9  S 
gyrB
10  S 
rpoB
1  S 
tcdB
3  S 
tcdC_complete 
3  S 
tcdC_fragment 
2  S 
treR 
4  S 

Tools

Analysis: