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Full information on isolate OXC11897 (id:78188)

Projects

This isolate is a member of the following projects:

Oxfordshire FSA Human Surveillance
This isolate is part of the Food Standards Agency funded project for enhanced molecular-based (MLST/wgMLST) surveillance and source attribution of human Campylobacter, in the UK.
FSA-FS101013 C. coli
C. coli human disease isolates collected for the Food Standards Agency funded project for enhanced molecular-based (MLST/wgMLST) surveillance and source attribution of human Campylobacter, in the UK.

Provenance/meta data

id
78188
isolate
OXC11897
alias
RL18005369
country
UK
continent
Europe
region
Oxfordshire
year
2018
month
9
received date
2018-09-27
source
human stool
species
Campylobacter coli
sender
Anais Painset, PHE, Colindale, London
curator
Alison Cody, Department of Zoology, Oxford University, UK (E-mail: Alison.Cody@zoo.ox.ac.uk)
update history
16 updates show details
date entered
2018-12-05
datestamp
2019-04-17

Phenotypic fields

    fluoroquinolone genotypes 1
    gyrA_CE[86:T-I]
    tetracycline genotypes 1
    tet(O)_2

Sequence bin

contigs
28
total length
1,648,874 bp
max length
337,343 bp
mean length
58,889 bp
N50 contig number
3
N50 length (L50)
266,132
N90 contig number
8
N90 length (L90)
52,613
N95 contig number
10
N95 length (L95)
45,630
loci tagged
1,589
detailed breakdown
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Schemes and loci

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