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Full information on isolate OXC11897 (id:78188)

Projects

This isolate is a member of the following projects:

Oxfordshire FSA Human Surveillance
This isolate is part of the Food Standards Agency funded project for enhanced molecular-based (MLST/wgMLST) surveillance and source attribution of human Campylobacter, in the UK.
FSA-FS101013 C. coli
C. coli human disease isolates collected for the Food Standards Agency funded project for enhanced molecular-based (MLST/wgMLST) surveillance and source attribution of human Campylobacter, in the UK.

Provenance/meta data

id
78188
isolate
OXC11897
alias
RL18005369
country
UK
continent
Europe
region
Oxfordshire
year
2018
month
9
received date
2018-09-27
source
human stool
species
Campylobacter coli
sender
Anais Painset, PHE, Colindale, London
curator
Alison Cody, Department of Zoology, Oxford University, UK (E-mail: Alison.Cody@zoo.ox.ac.uk)
update history
37 updates show details
date entered
2018-12-05
datestamp
2019-06-26

Phenotypic fields

fluoroquinolone genotypes 1
gyrA_CE[86:T-I]
fluoroquinolone genotypes 2
T86I
tetracycline genotypes 1
tet(O)_2
tetracycline genotypes 2
tetO

Sequence bin

contigs
28
total length
1,648,874 bp
max length
337,343 bp
mean length
58,889 bp
N50 contig number
3
N50 length (L50)
266,132
N90 contig number
8
N90 length (L90)
52,613
N95 contig number
10
N95 length (L95)
45,630
loci tagged
1,587
detailed breakdown
Display

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Cjc_cgc_200C. jejuni / C. coli cgMLST v1.0Single-linkage200experimentalgroup: 1822 (24 isolates)
Cjc_cgc_100C. jejuni / C. coli cgMLST v1.0Single-linkage100experimentalgroup: 3733 (14 isolates)
Cjc_cgc_50C. jejuni / C. coli cgMLST v1.0Single-linkage50experimentalgroup: 5478 (14 isolates)
Cjc_cgc_25C. jejuni / C. coli cgMLST v1.0Single-linkage25experimentalgroup: 7870 (12 isolates)
Cjc_cgc_10C. jejuni / C. coli cgMLST v1.0Single-linkage10experimentalgroup: 11887 (11 isolates)

Schemes and loci

Tools

Analysis: