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Full information on isolate OXC11901 (id:78181)

Provenance/meta data

id
78181
isolate
OXC11901
alias
RL18005407
country
UK
continent
Europe
year
2018
received date
2018-10-03
source
human stool
species
Campylobacter jejuni
sender
Anais Painset, PHE, Colindale, London
curator
Alison Cody, Department of Zoology, Oxford University, UK (E-mail: Alison.Cody@zoo.ox.ac.uk)
update history
5 updates show details
date entered
2018-12-05
datestamp
2019-02-20

Phenotypic fields

    fluoroquinolone genotypes 1
    gyrA_CJ[86:T-I]

Sequence bin

contigs
22
total length
1,645,331 bp
max length
238,714 bp
mean length
74,788 bp
N50 contig number
5
N50 length (L50)
149,095
N90 contig number
11
N90 length (L90)
78,193
N95 contig number
12
N95 length (L95)
42,350
loci tagged
1,622
detailed breakdown
Display

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Cjc_cgc_200C. jejuni / C. coli cgMLST v1.0Single-linkage200experimentalgroup: 270 (33 isolates)
Cjc_cgc_100C. jejuni / C. coli cgMLST v1.0Single-linkage100experimentalgroup: 835 (32 isolates)
Cjc_cgc_50C. jejuni / C. coli cgMLST v1.0Single-linkage50experimentalgroup: 1130 (31 isolates)
Cjc_cgc_25C. jejuni / C. coli cgMLST v1.0Single-linkage25experimentalgroup: 1519 (30 isolates)
Cjc_cgc_10C. jejuni / C. coli cgMLST v1.0Single-linkage10experimentalgroup: 6012 (4 isolates)
Cjc_cgc_5C. jejuni / C. coli cgMLST v1.0Single-linkage5experimentalgroup: 7381 (4 isolates)

Schemes and loci

Tools

Analysis: