PubMLST Database home Contents
Log in
Help

Full information on isolate OXC11899 (id:78180)

Projects

This isolate is a member of the following project:

Oxfordshire FSA Human Surveillance
This isolate is part of the Food Standards Agency funded project for enhanced molecular-based (MLST/wgMLST) surveillance and source attribution of human Campylobacter, in the UK.

Provenance/meta data

id
78180
isolate
OXC11899
alias
RL18005379
country
UK
continent
Europe
region
Oxfordshire
year
2018
month
9
received date
2018-09-28
sex
male
source
human stool
species
Campylobacter jejuni
sender
Anais Painset, PHE, Colindale, London
curator
Alison Cody, Department of Zoology, Oxford University, UK (E-mail: Alison.Cody@zoo.ox.ac.uk)
update history
8 updates show details
date entered
2018-12-05
datestamp
2019-02-14

Sequence bin

contigs
28
total length
1,656,577 bp
max length
367,425 bp
mean length
59,164 bp
N50 contig number
4
N50 length (L50)
153,980
N90 contig number
10
N90 length (L90)
81,771
N95 contig number
11
N95 length (L95)
78,203
loci tagged
1,634
detailed breakdown
Display

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Cjc_cgc_200C. jejuni / C. coli cgMLST v1.0Single-linkage200experimentalgroup: 19 (1439 isolates)
Cjc_cgc_100C. jejuni / C. coli cgMLST v1.0Single-linkage100experimentalgroup: 26 (501 isolates)
Cjc_cgc_50C. jejuni / C. coli cgMLST v1.0Single-linkage50experimentalgroup: 28 (271 isolates)
Cjc_cgc_25C. jejuni / C. coli cgMLST v1.0Single-linkage25experimentalgroup: 32 (269 isolates)
Cjc_cgc_10C. jejuni / C. coli cgMLST v1.0Single-linkage10experimentalgroup: 126 (248 isolates)
Cjc_cgc_5C. jejuni / C. coli cgMLST v1.0Single-linkage5experimentalgroup: 1644 (22 isolates)

Schemes and loci

Tools

Analysis: