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Full information on isolate OXC11899 (id:78180)

Projects

This isolate is a member of the following projects:

Oxfordshire FSA Human Surveillance
This isolate is part of the Food Standards Agency funded project for enhanced molecular-based (MLST/wgMLST) surveillance and source attribution of human Campylobacter, in the UK.
FSA-FS101013 C. jejuni
C. jejuni human disease isolates collected for the Food Standards Agency funded project for enhanced molecular-based (MLST/wgMLST) surveillance and source attribution of human Campylobacter, in the UK.

Provenance/meta data

id
78180
isolate
OXC11899
alias
RL18005379
country
UK
continent
Europe
region
Oxfordshire
year
2018
month
9
received date
2018-09-28
sex
male
source
human stool
species
Campylobacter jejuni
sender
Anais Painset, PHE, Colindale, London
curator
Sophie Hedges, Oxford University (E-mail: sophie.hedges@zoo.ox.ac.uk)
update history
13 updates show details
date entered
2018-12-05
datestamp
2019-04-17

Sequence bin

contigs
28
total length
1,656,577 bp
max length
367,425 bp
mean length
59,164 bp
N50 contig number
4
N50 length (L50)
153,980
N90 contig number
10
N90 length (L90)
81,771
N95 contig number
11
N95 length (L95)
78,203
loci tagged
1,642
detailed breakdown
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Schemes and loci

Tools

Analysis: