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Full information on isolate OXC11895 (id:78177)

Projects

This isolate is a member of the following projects:

Oxfordshire FSA Human Surveillance
This isolate is part of the Food Standards Agency funded project for enhanced molecular-based (MLST/wgMLST) surveillance and source attribution of human Campylobacter, in the UK.
FSA-FS101013 C. jejuni
C. jejuni human disease isolates collected for the Food Standards Agency funded project for enhanced molecular-based (MLST/wgMLST) surveillance and source attribution of human Campylobacter, in the UK.

Provenance/meta data

id
78177
isolate
OXC11895
alias
RL18005357
country
UK
continent
Europe
region
Oxfordshire
year
2018
month
9
received date
2018-09-27
sex
female
source
human stool
species
Campylobacter jejuni
sender
Anais Painset, PHE, Colindale, London
curator
Alison Cody, Department of Zoology, Oxford University, UK (E-mail: Alison.Cody@zoo.ox.ac.uk)
update history
33 updates show details
date entered
2018-12-05
datestamp
2019-06-26

Phenotypic fields

fluoroquinolone genotypes 1
gyrA_CJ[86:T-I]
fluoroquinolone genotypes 2
T86I
tetracycline genotypes 1
tet(o)-Cc3
tetracycline genotypes 2
tetO

Sequence bin

contigs
93
total length
1,741,431 bp
max length
314,379 bp
mean length
18,726 bp
N50 contig number
4
N50 length (L50)
176,333
N90 contig number
10
N90 length (L90)
38,352
N95 contig number
15
N95 length (L95)
9,081
loci tagged
1,524
detailed breakdown
Display

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Cjc_cgc_200C. jejuni / C. coli cgMLST v1.0Single-linkage200experimentalgroup: 2379 (6 isolates)

Schemes and loci

Tools

Analysis: