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Full information on isolate OXC11890 (id:78176)

Projects

This isolate is a member of the following project:

Oxfordshire FSA Human Surveillance
This isolate is part of the Food Standards Agency funded project for enhanced molecular-based (MLST/wgMLST) surveillance and source attribution of human Campylobacter, in the UK.

Provenance/meta data

id
78176
isolate
OXC11890
alias
RL18005241
country
UK
continent
Europe
region
Oxfordshire
year
2018
month
9
received date
2018-09-12
sex
male
source
human stool
species
Campylobacter jejuni
sender
Anais Painset, PHE, Colindale, London
curator
Alison Cody, Department of Zoology, Oxford University, UK (E-mail: Alison.Cody@zoo.ox.ac.uk)
update history
7 updates show details
date entered
2018-12-05
datestamp
2019-02-14

Sequence bin

contigs
32
total length
1,679,117 bp
max length
500,972 bp
mean length
52,473 bp
N50 contig number
3
N50 length (L50)
183,614
N90 contig number
9
N90 length (L90)
65,547
N95 contig number
10
N95 length (L95)
26,884
loci tagged
1,612
detailed breakdown
Display

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Cjc_cgc_200C. jejuni / C. coli cgMLST v1.0Single-linkage200experimentalgroup: 37 (1167 isolates)
Cjc_cgc_100C. jejuni / C. coli cgMLST v1.0Single-linkage100experimentalgroup: 37 (1075 isolates)
Cjc_cgc_50C. jejuni / C. coli cgMLST v1.0Single-linkage50experimentalgroup: 80 (565 isolates)

Schemes and loci

Tools

Analysis: