PubMLST Database home Contents
Log in
Help

Full information on isolate OXC11896 (id:78175)

Projects

This isolate is a member of the following projects:

Oxfordshire FSA Human Surveillance
This isolate is part of the Food Standards Agency funded project for enhanced molecular-based (MLST/wgMLST) surveillance and source attribution of human Campylobacter, in the UK.
FSA-FS101013 C. jejuni
C. jejuni human disease isolates collected for the Food Standards Agency funded project for enhanced molecular-based (MLST/wgMLST) surveillance and source attribution of human Campylobacter, in the UK.

Provenance/meta data

id
78175
isolate
OXC11896
alias
RL18005353
country
UK
continent
Europe
region
Oxfordshire
year
2018
month
9
received date
2018-09-27
source
human stool
species
Campylobacter jejuni
sender
Anais Painset, PHE, Colindale, London
curator
Auto Tagger
update history
30 updates show details
date entered
2018-12-05
datestamp
2019-07-09

Sequence bin

contigs
84
total length
1,725,979 bp
max length
290,137 bp
mean length
20,548 bp
N50 contig number
4
N50 length (L50)
213,039
N90 contig number
10
N90 length (L90)
49,034
N95 contig number
12
N95 length (L95)
18,799
loci tagged
1,656
detailed breakdown
Display

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Cjc_cgc_200C. jejuni / C. coli cgMLST v1.0Single-linkage200experimentalgroup: 1642 (512 isolates)
Cjc_cgc_100C. jejuni / C. coli cgMLST v1.0Single-linkage100experimentalgroup: 2723 (511 isolates)
Cjc_cgc_50C. jejuni / C. coli cgMLST v1.0Single-linkage50experimentalgroup: 4077 (507 isolates)
Cjc_cgc_25C. jejuni / C. coli cgMLST v1.0Single-linkage25experimentalgroup: 5927 (504 isolates)
Cjc_cgc_10C. jejuni / C. coli cgMLST v1.0Single-linkage10experimentalgroup: 9124 (495 isolates)
Cjc_cgc_5C. jejuni / C. coli cgMLST v1.0Single-linkage5experimentalgroup: 19395 (27 isolates)

Schemes and loci

Tools

Analysis: