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Full information on isolate OXC11893 (id:78162)

Projects

This isolate is a member of the following projects:

Oxfordshire FSA Human Surveillance
This isolate is part of the Food Standards Agency funded project for enhanced molecular-based (MLST/wgMLST) surveillance and source attribution of human Campylobacter, in the UK.
FSA-FS101013 C. jejuni
C. jejuni human disease isolates collected for the Food Standards Agency funded project for enhanced molecular-based (MLST/wgMLST) surveillance and source attribution of human Campylobacter, in the UK.

Provenance/meta data

id
78162
isolate
OXC11893
alias
RL18005304
country
UK
continent
Europe
region
Oxfordshire
year
2018
month
9
received date
2018-09-19
sex
female
source
human stool
species
Campylobacter jejuni
sender
Anais Painset, PHE, Colindale, London
curator
Alison Cody, Department of Zoology, Oxford University, UK (E-mail: Alison.Cody@zoo.ox.ac.uk)
update history
34 updates show details
date entered
2018-12-05
datestamp
2019-06-26

Phenotypic fields

fluoroquinolone genotypes 1
gyrA_CJ[86:T-I]
fluoroquinolone genotypes 2
T86I
tetracycline genotypes 1
tet(O)
tetracycline genotypes 2
tetO

Sequence bin

contigs
35
total length
1,620,170 bp
max length
367,093 bp
mean length
46,291 bp
N50 contig number
4
N50 length (L50)
169,784
N90 contig number
9
N90 length (L90)
82,239
N95 contig number
10
N95 length (L95)
77,424
loci tagged
1,622
detailed breakdown
Display

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Cjc_cgc_200C. jejuni / C. coli cgMLST v1.0Single-linkage200experimentalgroup: 1643 (923 isolates)
Cjc_cgc_100C. jejuni / C. coli cgMLST v1.0Single-linkage100experimentalgroup: 2762 (77 isolates)
Cjc_cgc_50C. jejuni / C. coli cgMLST v1.0Single-linkage50experimentalgroup: 4130 (53 isolates)
Cjc_cgc_25C. jejuni / C. coli cgMLST v1.0Single-linkage25experimentalgroup: 7924 (17 isolates)
Cjc_cgc_10C. jejuni / C. coli cgMLST v1.0Single-linkage10experimentalgroup: 17909 (3 isolates)
Cjc_cgc_5C. jejuni / C. coli cgMLST v1.0Single-linkage5experimentalgroup: 22521 (3 isolates)

Schemes and loci

Tools

Analysis: