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Full information on isolate OXC11893 (id:78162)

Projects

This isolate is a member of the following projects:

Oxfordshire FSA Human Surveillance
This isolate is part of the Food Standards Agency funded project for enhanced molecular-based (MLST/wgMLST) surveillance and source attribution of human Campylobacter, in the UK.
FSA-FS101013 C. jejuni
C. jejuni human disease isolates collected for the Food Standards Agency funded project for enhanced molecular-based (MLST/wgMLST) surveillance and source attribution of human Campylobacter, in the UK.

Provenance/meta data

id
78162
isolate
OXC11893
alias
RL18005304
country
UK
continent
Europe
region
Oxfordshire
year
2018
month
9
received date
2018-09-19
sex
female
source
human stool
species
Campylobacter jejuni
sender
Anais Painset, PHE, Colindale, London
curator
Sophie Hedges, Oxford University (E-mail: sophie.hedges@zoo.ox.ac.uk)
update history
18 updates show details
date entered
2018-12-05
datestamp
2019-04-17

Phenotypic fields

    fluoroquinolone genotypes 1
    gyrA_CJ[86:T-I]
    tetracycline genotypes 1
    tet(O)

Sequence bin

contigs
35
total length
1,620,170 bp
max length
367,093 bp
mean length
46,291 bp
N50 contig number
4
N50 length (L50)
169,784
N90 contig number
9
N90 length (L90)
82,239
N95 contig number
10
N95 length (L95)
77,424
loci tagged
1,622
detailed breakdown
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Schemes and loci

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