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Full information on isolate OXC11884 (id:78107)

Projects

This isolate is a member of the following projects:

Oxfordshire FSA Human Surveillance
This isolate is part of the Food Standards Agency funded project for enhanced molecular-based (MLST/wgMLST) surveillance and source attribution of human Campylobacter, in the UK.
FSA-FS101013 C. coli
C. coli human disease isolates collected for the Food Standards Agency funded project for enhanced molecular-based (MLST/wgMLST) surveillance and source attribution of human Campylobacter, in the UK.

Provenance/meta data

id
78107
isolate
OXC11884
alias
RL18005220
country
UK
continent
Europe
region
Oxfordshire
year
2018
month
9
received date
2018-09-10
sex
female
source
human stool
species
Campylobacter coli
sender
Anais Painset, PHE, Colindale, London
curator
Alison Cody, Department of Zoology, Oxford University, UK (E-mail: Alison.Cody@zoo.ox.ac.uk)
update history
34 updates show details
date entered
2018-12-05
datestamp
2019-06-26

Phenotypic fields

aminoglycoside genotypes 1
aadK
fluoroquinolone genotypes 1
gyrA_CE[86:T-I]
fluoroquinolone genotypes 2
T86I

Sequence bin

contigs
10
total length
1,655,593 bp
max length
603,111 bp
mean length
165,560 bp
N50 contig number
2
N50 length (L50)
390,404
N90 contig number
5
N90 length (L90)
130,646
N95 contig number
5
N95 length (L95)
130,646
loci tagged
1,571
detailed breakdown
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Schemes and loci

Tools

Analysis: