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Full information on isolate OXC11883 (id:78106)

Projects

This isolate is a member of the following projects:

Oxfordshire FSA Human Surveillance
This isolate is part of the Food Standards Agency funded project for enhanced molecular-based (MLST/wgMLST) surveillance and source attribution of human Campylobacter, in the UK.
FSA-FS101013 C. jejuni
C. jejuni human disease isolates collected for the Food Standards Agency funded project for enhanced molecular-based (MLST/wgMLST) surveillance and source attribution of human Campylobacter, in the UK.

Provenance/meta data

id
78106
isolate
OXC11883
alias
RL18005154
country
UK
continent
Europe
region
Oxfordshire
year
2018
month
9
received date
2018-09-03
source
human stool
species
Campylobacter jejuni
sender
Anais Painset, PHE, Colindale, London
curator
Alison Cody, Department of Zoology, Oxford University, UK (E-mail: Alison.Cody@zoo.ox.ac.uk)
update history
29 updates show details
date entered
2018-12-05
datestamp
2019-06-26

Sequence bin

contigs
30
total length
1,687,415 bp
max length
262,536 bp
mean length
56,248 bp
N50 contig number
5
N50 length (L50)
148,428
N90 contig number
10
N90 length (L90)
92,716
N95 contig number
12
N95 length (L95)
27,868
loci tagged
1,573
detailed breakdown
Display

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Cjc_cgc_200C. jejuni / C. coli cgMLST v1.0Single-linkage200experimentalgroup: 1638 (386 isolates)

Schemes and loci

Tools

Analysis: