Full information on isolate H142940463 (id:2604)

Provenance/primary metadata

id
2604
isolate
H142940463
country
UK [England]
continent
Europe
town or city
London
year
2014
month
7
isolation date
2014-07-16
disease
gastroenteritis
source
other animal
epidemiology
environmental isolate
species
Campylobacter coli
sender
Claire Jenkins, PHE, UK
curator
Auto Tagger
update history
72 updates show details
date entered
2014-10-05
datestamp
2022-11-15

Town or city

London

Aerial view Recentre

Publications (2)

  • Cody AJ, Bray JE, Jolley KA, McCarthy ND, Maiden MCJ (2017). Core Genome Multilocus Sequence Typing Scheme for Stable, Comparative Analyses of Campylobacter jejuni and C. coli Human Disease Isolates. J Clin Microbiol 55:2086-2097
  • Pearson BM, Louwen R, van Baarlen P, van Vliet AH (2015). Differential Distribution of Type II CRISPR-Cas Systems in Agricultural and Nonagricultural Campylobacter coli and Campylobacter jejuni Isolates Correlates with Lack of Shared Environments. Genome Biol Evol 7:2663-79

Sequence bin

contigs
266
total length
1,734,596 bp
max length
61,964 bp
mean length
6,522 bp
N50
11,246
L50
45
N90
3,557
L90
151
N95
2,202
L95
181
%GC
31.56
Ns
47689
gaps
381
loci tagged
1,137

Show sequence bin

Annotation quality metrics

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
MLST77100
Ribosomal MLST534992
C. jejuni / C. coli cgMLST v1.0134395270

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Campylobacter coli Proteobacteria > Epsilonproteobacteria > Campylobacterales > Campylobacteraceae > Campylobacter > Campylobacter coli 100%

Analysis performed: 2023-01-11

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