Full information on isolate 00-1597 (id:2245)
Provenance/primary metadata
- id
- 2245
- isolate
- 00-1597
- country
- Canada
- continent
- North America
- region
- Alberta
- year
- 2000
- disease
- gastroenteritis
- source
- human stool
- epidemiology
- sporadic case
- species
- Campylobacter jejuni
- penner
- 9, 37
- sender
- Clifford Clark, Bacteriology and Enteric Pathogens, National Microbiology Laboratory, Health Canada.
- curator
- Auto Tagger
- update history
- 51 updates show details
- date entered
- 2004-06-21
- datestamp
- 2022-07-20
Publication (1)
- Clark CG, Chong PM, McCorrister SJ, Mabon P, Walker M, Westmacott GR (2014). DNA sequence heterogeneity of Campylobacter jejuni CJIE4 prophages and expression of prophage genes. PLoS One 9:e95349
Annotation quality metrics
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| MLST | 7 | 7 | 100 | |
| Ribosomal MLST | 53 | 53 | 100 | |
| C. jejuni / C. coli cgMLST v1.0 | 1343 | 1319 | 98 | |
Analysis
rMLST species identification
| Rank | Taxon | Taxonomy | Support | Matches |
|---|---|---|---|---|
| SPECIES | Campylobacter jejuni | Proteobacteria > Epsilonproteobacteria > Campylobacterales > Campylobacteraceae > Campylobacter > Campylobacter jejuni | 100% |
Analysis performed: 2023-01-11
Similar isolates (determined by classification schemes)
Some groups only contain this isolate. Show single groups
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group |
|---|---|---|---|---|---|
| Cjc_cgc_200 | C. jejuni / C. coli cgMLST v1.0 | Single-linkage | 200 | experimental | 1814 (204 isolates) |
| Cjc_cgc_200 | C. jejuni / C. coli cgMLST v1.0 | Single-linkage | 200 | experimental | 1814 (204 isolates) |
| Cjc_cgc_100 | C. jejuni / C. coli cgMLST v1.0 | Single-linkage | 100 | experimental | 15 (1 isolate) |
| Cjc_cgc_50 | C. jejuni / C. coli cgMLST v1.0 | Single-linkage | 50 | experimental | 17 (1 isolate) |
| Cjc_cgc_25 | C. jejuni / C. coli cgMLST v1.0 | Single-linkage | 25 | experimental | 18 (1 isolate) |
| Cjc_cgc_10 | C. jejuni / C. coli cgMLST v1.0 | Single-linkage | 10 | experimental | 19 (1 isolate) |
| Cjc_cgc_5 | C. jejuni / C. coli cgMLST v1.0 | Single-linkage | 5 | experimental | 19 (1 isolate) |
Schemes and loci
Navigate and select schemes within tree to display allele designations
Tools
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