Full information on isolate 00-1597 (id:2245)

Provenance/primary metadata

id
2245
isolate
00-1597
country
Canada
continent
North America
region
Alberta
year
2000
disease
gastroenteritis
source
human stool
epidemiology
sporadic case
species
Campylobacter jejuni
penner
9, 37
sender
Clifford Clark, Bacteriology and Enteric Pathogens, National Microbiology Laboratory, Health Canada.
curator
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update history
51 updates show details
date entered
2004-06-21
datestamp
2022-07-20

Publication (1)

  • Clark CG, Chong PM, McCorrister SJ, Mabon P, Walker M, Westmacott GR (2014). DNA sequence heterogeneity of Campylobacter jejuni CJIE4 prophages and expression of prophage genes. PLoS One 9:e95349

Sequence bin

contigs
1
length
1,742,047 bp
%GC
30.37
Ns
0
gaps
0
loci tagged
1,573

Show sequence bin

Annotation quality metrics

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
MLST77100
Ribosomal MLST5353100
C. jejuni / C. coli cgMLST v1.01343131998

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Campylobacter jejuni Proteobacteria > Epsilonproteobacteria > Campylobacterales > Campylobacteraceae > Campylobacter > Campylobacter jejuni 100%

Analysis performed: 2023-01-11

Similar isolates (determined by classification schemes)

Some groups only contain this isolate. Show single groups

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Cjc_cgc_200C. jejuni / C. coli cgMLST v1.0Single-linkage200experimental1814 (204 isolates)
Cjc_cgc_200C. jejuni / C. coli cgMLST v1.0Single-linkage200experimental1814 (204 isolates)
Cjc_cgc_100C. jejuni / C. coli cgMLST v1.0Single-linkage100experimental15 (1 isolate)
Cjc_cgc_50C. jejuni / C. coli cgMLST v1.0Single-linkage50experimental17 (1 isolate)
Cjc_cgc_25C. jejuni / C. coli cgMLST v1.0Single-linkage25experimental18 (1 isolate)
Cjc_cgc_10C. jejuni / C. coli cgMLST v1.0Single-linkage10experimental19 (1 isolate)
Cjc_cgc_5C. jejuni / C. coli cgMLST v1.0Single-linkage5experimental19 (1 isolate)

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