Full information on isolate D2669 (id:1811)

Provenance/primary metadata

id
1811
isolate
D2669
alias
SRR1993462
country
USA
continent
North America
region
Kansas
year
1988
disease
gastroenteritis
source
human stool
epidemiology
general outbreak
species
Campylobacter jejuni
penner
2
ENA run accession
SRR1993462 www.ebi.ac.uk
sender
Andrew Sails, CDC, Atlanta, USA
curator
Auto Tagger
update history
40 updates show details
date entered
2002-07-15
datestamp
2022-07-22

Sequence bin

contigs
29
total length
1,625,437 bp
max length
371,020 bp
mean length
56,050 bp
N50
154,027
L50
4
N90
76,163
L90
10
N95
72,700
L95
11
%GC
30.44
Ns
0
gaps
0
loci tagged
1,658

Show sequence bin

Annotation quality metrics

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
MLST77100
Ribosomal MLST5353100
C. jejuni / C. coli cgMLST v1.01343133099

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Campylobacter jejuni Proteobacteria > Epsilonproteobacteria > Campylobacterales > Campylobacteraceae > Campylobacter > Campylobacter jejuni 100%

Analysis performed: 2023-01-11

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Cjc_cgc_200C. jejuni / C. coli cgMLST v1.0Single-linkage200experimental7 (158 isolates)
Cjc_cgc_100C. jejuni / C. coli cgMLST v1.0Single-linkage100experimental8 (4 isolates)
Cjc_cgc_50C. jejuni / C. coli cgMLST v1.0Single-linkage50experimental9 (4 isolates)
Cjc_cgc_25C. jejuni / C. coli cgMLST v1.0Single-linkage25experimental10 (4 isolates)
Cjc_cgc_10C. jejuni / C. coli cgMLST v1.0Single-linkage10experimental11 (4 isolates)
Cjc_cgc_5C. jejuni / C. coli cgMLST v1.0Single-linkage5experimental11 (4 isolates)
Cjc_cgc_200C. jejuni / C. coli cgMLST v1.0Single-linkage200experimental7 (158 isolates)
Cjc_cgc_100C. jejuni / C. coli cgMLST v1.0Single-linkage100experimental8 (4 isolates)
Cjc_cgc_50C. jejuni / C. coli cgMLST v1.0Single-linkage50experimental9 (4 isolates)
Cjc_cgc_25C. jejuni / C. coli cgMLST v1.0Single-linkage25experimental10 (4 isolates)
Cjc_cgc_10C. jejuni / C. coli cgMLST v1.0Single-linkage10experimental11 (4 isolates)
Cjc_cgc_5C. jejuni / C. coli cgMLST v1.0Single-linkage5experimental11 (4 isolates)

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