Full information on isolate D2261 (id:1810)

Provenance/primary metadata

id
1810
isolate
D2261
alias
SRR1993458
country
USA
continent
North America
region
New York
year
1986
disease
gastroenteritis
source
human stool
epidemiology
sporadic case
species
Campylobacter jejuni
penner
2
ENA run accession
SRR1993458 www.ebi.ac.uk
sender
Kate Dingle, University of Oxford, UK
curator
Auto Tagger
update history
39 updates show details
date entered
2002-07-15
datestamp
2022-07-22

Sequence bin

contigs
31
total length
1,623,985 bp
max length
521,929 bp
mean length
52,387 bp
N50
182,613
L50
3
N90
95,930
L90
7
N95
90,335
L95
8
%GC
30.45
Ns
0
gaps
0
loci tagged
1,657

Show sequence bin

Annotation quality metrics

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
MLST77100
Ribosomal MLST5353100
C. jejuni / C. coli cgMLST v1.01343132898

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Campylobacter jejuni Proteobacteria > Epsilonproteobacteria > Campylobacterales > Campylobacteraceae > Campylobacter > Campylobacter jejuni 100%

Analysis performed: 2023-01-11

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Cjc_cgc_200C. jejuni / C. coli cgMLST v1.0Single-linkage200experimental7 (158 isolates)
Cjc_cgc_100C. jejuni / C. coli cgMLST v1.0Single-linkage100experimental7 (150 isolates)
Cjc_cgc_50C. jejuni / C. coli cgMLST v1.0Single-linkage50experimental8 (21 isolates)
Cjc_cgc_25C. jejuni / C. coli cgMLST v1.0Single-linkage25experimental9 (2 isolates)
Cjc_cgc_10C. jejuni / C. coli cgMLST v1.0Single-linkage10experimental10 (2 isolates)
Cjc_cgc_5C. jejuni / C. coli cgMLST v1.0Single-linkage5experimental10 (2 isolates)
Cjc_cgc_200C. jejuni / C. coli cgMLST v1.0Single-linkage200experimental7 (158 isolates)
Cjc_cgc_100C. jejuni / C. coli cgMLST v1.0Single-linkage100experimental7 (150 isolates)
Cjc_cgc_50C. jejuni / C. coli cgMLST v1.0Single-linkage50experimental8 (21 isolates)
Cjc_cgc_25C. jejuni / C. coli cgMLST v1.0Single-linkage25experimental9 (2 isolates)
Cjc_cgc_10C. jejuni / C. coli cgMLST v1.0Single-linkage10experimental10 (2 isolates)
Cjc_cgc_5C. jejuni / C. coli cgMLST v1.0Single-linkage5experimental10 (2 isolates)

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