Full information on isolate D2769 (id:1799)

Provenance/primary metadata

id
1799
isolate
D2769
alias
SRR1993313
country
USA
continent
North America
region
Maine
year
1989
disease
gastroenteritis
source
human stool
epidemiology
general outbreak
species
Campylobacter jejuni
penner
2
ENA run accession
SRR1993313 www.ebi.ac.uk
comments
Patient developed GBS
sender
Andrew Sails, CDC, Atlanta, USA
curator
Auto Tagger
update history
41 updates show details
date entered
2002-07-15
datestamp
2022-10-25

Sequence bin

contigs
35
total length
1,719,444 bp
max length
340,308 bp
mean length
49,127 bp
N50
251,457
L50
3
N90
42,551
L90
9
N95
21,474
L95
11
%GC
30.44
Ns
0
gaps
0
loci tagged
1,653

Show sequence bin

Annotation quality metrics

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
MLST77100
Ribosomal MLST5353100
C. jejuni / C. coli cgMLST v1.01343133399

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Campylobacter jejuni Proteobacteria > Epsilonproteobacteria > Campylobacterales > Campylobacteraceae > Campylobacter > Campylobacter jejuni 100%

Analysis performed: 2023-01-11

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Cjc_cgc_200C. jejuni / C. coli cgMLST v1.0Single-linkage200experimental5 (6 isolates)
Cjc_cgc_100C. jejuni / C. coli cgMLST v1.0Single-linkage100experimental5 (6 isolates)
Cjc_cgc_50C. jejuni / C. coli cgMLST v1.0Single-linkage50experimental6 (6 isolates)
Cjc_cgc_25C. jejuni / C. coli cgMLST v1.0Single-linkage25experimental6 (6 isolates)
Cjc_cgc_10C. jejuni / C. coli cgMLST v1.0Single-linkage10experimental6 (6 isolates)
Cjc_cgc_5C. jejuni / C. coli cgMLST v1.0Single-linkage5experimental6 (6 isolates)
Cjc_cgc_200C. jejuni / C. coli cgMLST v1.0Single-linkage200experimental5 (6 isolates)
Cjc_cgc_100C. jejuni / C. coli cgMLST v1.0Single-linkage100experimental5 (6 isolates)
Cjc_cgc_50C. jejuni / C. coli cgMLST v1.0Single-linkage50experimental6 (6 isolates)
Cjc_cgc_25C. jejuni / C. coli cgMLST v1.0Single-linkage25experimental6 (6 isolates)
Cjc_cgc_10C. jejuni / C. coli cgMLST v1.0Single-linkage10experimental6 (6 isolates)
Cjc_cgc_5C. jejuni / C. coli cgMLST v1.0Single-linkage5experimental6 (6 isolates)

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