Full information on isolate D2643 (id:1793)

Provenance/primary metadata

id
1793
isolate
D2643
alias
SRR1993460
country
USA
continent
North America
region
Oklahoma
year
1988
disease
gastroenteritis
source
human stool
epidemiology
general outbreak
species
Campylobacter jejuni
penner
1
ENA run accession
SRR1993460 www.ebi.ac.uk
sender
Andrew Sails, CDC, Atlanta, USA
curator
Auto Tagger
update history
33 updates show details
date entered
2002-07-15
datestamp
2022-08-25

Sequence bin

contigs
29
total length
1,620,903 bp
max length
368,300 bp
mean length
55,894 bp
N50
221,067
L50
3
N90
42,788
L90
12
N95
30,451
L95
14
%GC
30.45
Ns
0
gaps
0
loci tagged
1,633

Show sequence bin

Annotation quality metrics

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
MLST77100
Ribosomal MLST5353100
C. jejuni / C. coli cgMLST v1.01343133399

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Campylobacter jejuni Proteobacteria > Epsilonproteobacteria > Campylobacterales > Campylobacteraceae > Campylobacter > Campylobacter jejuni 100%

Analysis performed: 2023-01-11

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Cjc_cgc_200C. jejuni / C. coli cgMLST v1.0Single-linkage200experimental4 (741 isolates)
Cjc_cgc_100C. jejuni / C. coli cgMLST v1.0Single-linkage100experimental4 (628 isolates)
Cjc_cgc_50C. jejuni / C. coli cgMLST v1.0Single-linkage50experimental4 (9 isolates)
Cjc_cgc_25C. jejuni / C. coli cgMLST v1.0Single-linkage25experimental4 (5 isolates)
Cjc_cgc_10C. jejuni / C. coli cgMLST v1.0Single-linkage10experimental4 (4 isolates)
Cjc_cgc_5C. jejuni / C. coli cgMLST v1.0Single-linkage5experimental4 (4 isolates)
Cjc_cgc_200C. jejuni / C. coli cgMLST v1.0Single-linkage200experimental4 (741 isolates)
Cjc_cgc_100C. jejuni / C. coli cgMLST v1.0Single-linkage100experimental4 (628 isolates)
Cjc_cgc_50C. jejuni / C. coli cgMLST v1.0Single-linkage50experimental4 (9 isolates)
Cjc_cgc_25C. jejuni / C. coli cgMLST v1.0Single-linkage25experimental4 (5 isolates)
Cjc_cgc_10C. jejuni / C. coli cgMLST v1.0Single-linkage10experimental4 (4 isolates)
Cjc_cgc_5C. jejuni / C. coli cgMLST v1.0Single-linkage5experimental4 (4 isolates)

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