Full information on isolate 81-176 (id:1481)
Provenance/primary metadata
- id
- 1481
- isolate
- 81-176
- alias
- CP000538
- country
- USA
- continent
- North America
- year
- 1981
- source
- human stool
- epidemiology
- general outbreak
- species
- Campylobacter jejuni
- comments
- Complete genome uploaded from GenBank (accession number CP000538).
- sender
- Kate Dingle, University of Oxford, UK
- curator
- Auto Tagger
- update history
- 70 updates show details
- date entered
- 2002-04-03
- datestamp
- 2022-07-22
Secondary metadata
- ciprofloxacin phenotype
- S
Publications (2)
- Hofreuter D, Tsai J, Watson RO, Novik V, Altman B, Benitez M, Clark C, Perbost C, Jarvie T, Du L, Galán JE (2006). Unique features of a highly pathogenic Campylobacter jejuni strain. Infect Immun 74:4694-707
- Sheppard SK, Didelot X, Jolley KA, Darling AE, Pascoe B, Meric G, Kelly DJ, Cody A, Colles FM, Strachan NJ, Ogden ID, Forbes K, French NP, Carter P, Miller WG, McCarthy ND, Owen R, Litrup E, Egholm M, Affourtit JP, Bentley SD, Parkhill J, Maiden MC, Falush D (2013). Progressive genome-wide introgression in agricultural Campylobacter coli. Mol Ecol 22:1051-64
Annotation quality metrics
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| MLST | 7 | 7 | 100 | |
| Ribosomal MLST | 53 | 53 | 100 | |
| C. jejuni / C. coli cgMLST v1.0 | 1343 | 1329 | 98 | |
Analysis
rMLST species identification
| Rank | Taxon | Taxonomy | Support | Matches |
|---|---|---|---|---|
| SPECIES | Campylobacter jejuni | Proteobacteria > Epsilonproteobacteria > Campylobacterales > Campylobacteraceae > Campylobacter > Campylobacter jejuni | 100% |
Analysis performed: 2023-01-11
Similar isolates (determined by classification schemes)
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group |
|---|---|---|---|---|---|
| Cjc_cgc_200 | C. jejuni / C. coli cgMLST v1.0 | Single-linkage | 200 | experimental | 2 (800 isolates) |
| Cjc_cgc_100 | C. jejuni / C. coli cgMLST v1.0 | Single-linkage | 100 | experimental | 2 (9 isolates) |
| Cjc_cgc_50 | C. jejuni / C. coli cgMLST v1.0 | Single-linkage | 50 | experimental | 2 (3 isolates) |
| Cjc_cgc_25 | C. jejuni / C. coli cgMLST v1.0 | Single-linkage | 25 | experimental | 2 (3 isolates) |
| Cjc_cgc_10 | C. jejuni / C. coli cgMLST v1.0 | Single-linkage | 10 | experimental | 2 (3 isolates) |
| Cjc_cgc_5 | C. jejuni / C. coli cgMLST v1.0 | Single-linkage | 5 | experimental | 2 (3 isolates) |
| Cjc_cgc_200 | C. jejuni / C. coli cgMLST v1.0 | Single-linkage | 200 | experimental | 2 (800 isolates) |
| Cjc_cgc_100 | C. jejuni / C. coli cgMLST v1.0 | Single-linkage | 100 | experimental | 2 (9 isolates) |
| Cjc_cgc_50 | C. jejuni / C. coli cgMLST v1.0 | Single-linkage | 50 | experimental | 2 (3 isolates) |
| Cjc_cgc_25 | C. jejuni / C. coli cgMLST v1.0 | Single-linkage | 25 | experimental | 2 (3 isolates) |
| Cjc_cgc_10 | C. jejuni / C. coli cgMLST v1.0 | Single-linkage | 10 | experimental | 2 (3 isolates) |
| Cjc_cgc_5 | C. jejuni / C. coli cgMLST v1.0 | Single-linkage | 5 | experimental | 2 (3 isolates) |
Schemes and loci
Navigate and select schemes within tree to display allele designations
Tools
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