Full information on isolate 81116 (id:1220)

Provenance/primary metadata

id
1220
isolate
81116
alias
NCTC11828
country
UK
continent
Europe
year
1981
disease
gastroenteritis
source
human stool
epidemiology
general outbreak
species
Campylobacter jejuni
comments
Complete genome uploaded from GenBank (accession number CP000814).
sender
Gina Manning, Dept. Bacterial Diseases, Veterinary Laboratories Agency, UK
curator
Auto Tagger
update history
76 updates show details
date entered
2002-02-20
datestamp
2022-07-22

Secondary metadata

ciprofloxacin phenotype
S

Publications (3)

  • Pascoe B, Méric G, Yahara K, Wimalarathna H, Murray S, Hitchings MD, Sproston EL, Carrillo CD, Taboada EN, Cooper KK, Huynh S, Cody AJ, Jolley KA, Maiden MCJ, McCarthy ND, Didelot X, Parker CT, Sheppard SK (2017). Local genes for local bacteria: Evidence of allopatry in the genomes of transatlantic Campylobacter populations. Mol Ecol 26:4497-4508
  • Pearson BM, Gaskin DJ, Segers RP, Wells JM, Nuijten PJ, van Vliet AH (2007). The complete genome sequence of Campylobacter jejuni strain 81116 (NCTC11828). J Bacteriol 189:8402-3
  • Sheppard SK, Didelot X, Jolley KA, Darling AE, Pascoe B, Meric G, Kelly DJ, Cody A, Colles FM, Strachan NJ, Ogden ID, Forbes K, French NP, Carter P, Miller WG, McCarthy ND, Owen R, Litrup E, Egholm M, Affourtit JP, Bentley SD, Parkhill J, Maiden MC, Falush D (2013). Progressive genome-wide introgression in agricultural Campylobacter coli. Mol Ecol 22:1051-64

Sequence bin

contigs
1
length
1,628,115 bp
%GC
30.54
Ns
0
gaps
0
loci tagged
1,552

Show sequence bin

Annotation quality metrics

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
MLST77100
Ribosomal MLST5353100
C. jejuni / C. coli cgMLST v1.01343132598

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Campylobacter jejuni Proteobacteria > Epsilonproteobacteria > Campylobacterales > Campylobacteraceae > Campylobacter > Campylobacter jejuni 100%

Analysis performed: 2023-01-11

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Cjc_cgc_200C. jejuni / C. coli cgMLST v1.0Single-linkage200experimental1 (542 isolates)
Cjc_cgc_100C. jejuni / C. coli cgMLST v1.0Single-linkage100experimental1 (321 isolates)
Cjc_cgc_50C. jejuni / C. coli cgMLST v1.0Single-linkage50experimental1 (2 isolates)
Cjc_cgc_25C. jejuni / C. coli cgMLST v1.0Single-linkage25experimental1 (2 isolates)
Cjc_cgc_10C. jejuni / C. coli cgMLST v1.0Single-linkage10experimental1 (2 isolates)
Cjc_cgc_5C. jejuni / C. coli cgMLST v1.0Single-linkage5experimental1 (2 isolates)
Cjc_cgc_200C. jejuni / C. coli cgMLST v1.0Single-linkage200experimental1 (542 isolates)
Cjc_cgc_100C. jejuni / C. coli cgMLST v1.0Single-linkage100experimental1 (321 isolates)
Cjc_cgc_50C. jejuni / C. coli cgMLST v1.0Single-linkage50experimental1 (2 isolates)
Cjc_cgc_25C. jejuni / C. coli cgMLST v1.0Single-linkage25experimental1 (2 isolates)
Cjc_cgc_10C. jejuni / C. coli cgMLST v1.0Single-linkage10experimental1 (2 isolates)
Cjc_cgc_5C. jejuni / C. coli cgMLST v1.0Single-linkage5experimental1 (2 isolates)

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