Full information on isolate MK1900 (id:98)
Provenance/primary metadata
- id
- 98
- isolate
- MK1900
- alias
- 16
- country
- Philippines
- continent
- Asia
- year
- 1990
- species
- Burkholderia pseudomallei
- source
- animal
- animal source
- monkey
- sender
- Tyrone Pitt, Central Public Health Laboratory, London, UK
- curator
- Auto Tagger
- update history
- 6 updates show details
- date entered
- 2016-02-01
- datestamp
- 2022-01-12
Publication (1)
- Godoy D, Randle G, Simpson AJ, Aanensen DM, Pitt TL, Kinoshita R, Spratt BG (2003). Multilocus sequence typing and evolutionary relationships among the causative agents of melioidosis and glanders, Burkholderia pseudomallei and Burkholderia mallei. J Clin Microbiol 41:2068-79
Sequence bin
- contigs
- 110
- total length
- 7,103,478 bp
- max length
- 476,735 bp
- mean length
- 64,578 bp
- N50
- 144,951
- L50
- 16
- N90
- 45,003
- L90
- 48
- N95
- 21,676
- L95
- 59
- %GC
- 68.24
- Ns
- 479
- gaps
- 10
- loci tagged
- 5,602
Annotation quality metrics
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| MLST | 7 | 7 | 100 | |
| Ribosomal MLST | 53 | 53 | 100 | |
| cgMLST | 4090 | 4080 | 99 | |
Analysis
rMLST species identification
| Rank | Taxon | Taxonomy | Support | Matches |
|---|---|---|---|---|
| SPECIES | Burkholderia pseudomallei | Proteobacteria > Betaproteobacteria > Burkholderiales > Burkholderiaceae > Burkholderia > Burkholderia pseudomallei | 100% |
Analysis performed: 2022-11-24
Similar isolates (determined by classification schemes)
No similar isolates at any threshold. Show groups
Schemes and loci
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Tools
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