Full information on isolate SID 2889 (id:96)

Provenance/primary metadata

id
96
isolate
SID 2889
alias
SID 2889/99
country
Bangladesh
continent
Asia
year
1999
species
Burkholderia pseudomallei
source
human
sender
Tyrone Pitt, Central Public Health Laboratory, London, UK
curator
Auto Tagger
update history
5 updates show details
date entered
2016-02-01
datestamp
2022-01-12

Publication (1)

  • Godoy D, Randle G, Simpson AJ, Aanensen DM, Pitt TL, Kinoshita R, Spratt BG (2003). Multilocus sequence typing and evolutionary relationships among the causative agents of melioidosis and glanders, Burkholderia pseudomallei and Burkholderia mallei. J Clin Microbiol 41:2068-79

Sequence bin

contigs
155
total length
7,185,709 bp
max length
331,866 bp
mean length
46,360 bp
N50
102,422
L50
22
N90
23,524
L90
78
N95
15,718
L95
97
%GC
68.12
Ns
842
gaps
11
loci tagged
5,597

Show sequence bin

Annotation quality metrics

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
MLST77100
Ribosomal MLST5353100
cgMLST4090408599

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Burkholderia pseudomallei Proteobacteria > Betaproteobacteria > Burkholderiales > Burkholderiaceae > Burkholderia > Burkholderia pseudomallei 100%

Analysis performed: 2022-11-24

Similar isolates (determined by classification schemes)

No similar isolates at any threshold. Show groups

Schemes and loci

Navigate and select schemes within tree to display allele designations

Tools

Export:
Analysis: