Full information on isolate SID 2889 (id:96)
Provenance/primary metadata
- id
- 96
- isolate
- SID 2889
- alias
- SID 2889/99
- country
- Bangladesh
- continent
- Asia
- year
- 1999
- species
- Burkholderia pseudomallei
- source
- human
- sender
- Tyrone Pitt, Central Public Health Laboratory, London, UK
- curator
- Auto Tagger
- update history
- 5 updates show details
- date entered
- 2016-02-01
- datestamp
- 2022-01-12
Publication (1)
- Godoy D, Randle G, Simpson AJ, Aanensen DM, Pitt TL, Kinoshita R, Spratt BG (2003). Multilocus sequence typing and evolutionary relationships among the causative agents of melioidosis and glanders, Burkholderia pseudomallei and Burkholderia mallei. J Clin Microbiol 41:2068-79
Sequence bin
- contigs
- 155
- total length
- 7,185,709 bp
- max length
- 331,866 bp
- mean length
- 46,360 bp
- N50
- 102,422
- L50
- 22
- N90
- 23,524
- L90
- 78
- N95
- 15,718
- L95
- 97
- %GC
- 68.12
- Ns
- 842
- gaps
- 11
- loci tagged
- 5,597
Annotation quality metrics
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| MLST | 7 | 7 | 100 | |
| Ribosomal MLST | 53 | 53 | 100 | |
| cgMLST | 4090 | 4085 | 99 | |
Analysis
rMLST species identification
| Rank | Taxon | Taxonomy | Support | Matches |
|---|---|---|---|---|
| SPECIES | Burkholderia pseudomallei | Proteobacteria > Betaproteobacteria > Burkholderiales > Burkholderiaceae > Burkholderia > Burkholderia pseudomallei | 100% |
Analysis performed: 2022-11-24
Similar isolates (determined by classification schemes)
No similar isolates at any threshold. Show groups
Schemes and loci
Navigate and select schemes within tree to display allele designations
Tools
Export:
Analysis: