Full information on isolate Hainan 106 (id:84)
Provenance/primary metadata
- id
- 84
- isolate
- Hainan 106
- alias
- Hainan106
- country
- China
- continent
- Asia
- species
- Burkholderia pseudomallei
- source
- unknown
- sender
- Tyrone Pitt, Central Public Health Laboratory, London, UK
- curator
- Auto Tagger
- update history
- 5 updates show details
- date entered
- 2016-02-01
- datestamp
- 2022-01-12
Publication (1)
- Godoy D, Randle G, Simpson AJ, Aanensen DM, Pitt TL, Kinoshita R, Spratt BG (2003). Multilocus sequence typing and evolutionary relationships among the causative agents of melioidosis and glanders, Burkholderia pseudomallei and Burkholderia mallei. J Clin Microbiol 41:2068-79
Sequence bin
- contigs
- 139
- total length
- 7,026,197 bp
- max length
- 332,621 bp
- mean length
- 50,549 bp
- N50
- 95,528
- L50
- 21
- N90
- 28,963
- L90
- 72
- N95
- 18,308
- L95
- 88
- %GC
- 68.13
- Ns
- 1069
- gaps
- 17
- loci tagged
- 5,559
Annotation quality metrics
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| MLST | 7 | 7 | 100 | |
| Ribosomal MLST | 53 | 53 | 100 | |
| cgMLST | 4090 | 4063 | 99 | |
Analysis
rMLST species identification
| Rank | Taxon | Taxonomy | Support | Matches |
|---|---|---|---|---|
| SPECIES | Burkholderia pseudomallei | Proteobacteria > Betaproteobacteria > Burkholderiales > Burkholderiaceae > Burkholderia > Burkholderia pseudomallei | 100% |
Analysis performed: 2022-11-24
Similar isolates (determined by classification schemes)
No similar isolates at any threshold. Show groups
Schemes and loci
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Tools
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