Full information on isolate NCTC 8016 (id:73)
Provenance/primary metadata
- id
- 73
- isolate
- NCTC 8016
- alias
- 5
- country
- Australia
- continent
- Oceania
- year
- 1949
- species
- Burkholderia pseudomallei
- source
- animal
- sender
- Tyrone Pitt, Central Public Health Laboratory, London, UK
- curator
- Auto Tagger
- update history
- 5 updates show details
- date entered
- 2016-02-01
- datestamp
- 2022-08-12
Publication (1)
- Godoy D, Randle G, Simpson AJ, Aanensen DM, Pitt TL, Kinoshita R, Spratt BG (2003). Multilocus sequence typing and evolutionary relationships among the causative agents of melioidosis and glanders, Burkholderia pseudomallei and Burkholderia mallei. J Clin Microbiol 41:2068-79
Sequence bin
- contigs
- 882
- total length
- 7,073,406 bp
- max length
- 118,108 bp
- mean length
- 8,020 bp
- N50
- 13,600
- L50
- 135
- N90
- 3,452
- L90
- 535
- N95
- 2,258
- L95
- 661
- %GC
- 68.05
- Ns
- 1638
- gaps
- 20
- loci tagged
- 4,909
Annotation quality metrics
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| MLST | 7 | 7 | 100 | |
| Ribosomal MLST | 53 | 47 | 88 | |
| cgMLST | 4090 | 3906 | 95 | |
Analysis
rMLST species identification
| Rank | Taxon | Taxonomy | Support | Matches |
|---|---|---|---|---|
| SPECIES | Burkholderia pseudomallei | Proteobacteria > Betaproteobacteria > Burkholderiales > Burkholderiaceae > Burkholderia > Burkholderia pseudomallei | 100% |
Analysis performed: 2022-11-24
Schemes and loci
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