Full information on isolate SID 3811 (id:71)
Provenance/primary metadata
- id
- 71
- isolate
- SID 3811
- alias
- SID 3811/99
- country
- Bangladesh
- continent
- Asia
- year
- 1999
- species
- Burkholderia pseudomallei
- source
- human
- comments
- Same patient as SID 3871 and SID 4045
- sender
- Tyrone Pitt, Central Public Health Laboratory, London, UK
- curator
- Auto Tagger
- update history
- 7 updates show details
- date entered
- 2016-02-01
- datestamp
- 2022-08-12
Publications (2)
- Abbink FC, Orendi JM, de Beaufort AJ (2001). Mother-to-child transmission of Burkholderia pseudomallei. N Engl J Med 344:1171-2
- Godoy D, Randle G, Simpson AJ, Aanensen DM, Pitt TL, Kinoshita R, Spratt BG (2003). Multilocus sequence typing and evolutionary relationships among the causative agents of melioidosis and glanders, Burkholderia pseudomallei and Burkholderia mallei. J Clin Microbiol 41:2068-79
Sequence bin
- contigs
- 140
- total length
- 7,288,001 bp
- max length
- 389,761 bp
- mean length
- 52,058 bp
- N50
- 95,987
- L50
- 26
- N90
- 27,696
- L90
- 75
- N95
- 20,094
- L95
- 90
- %GC
- 68.02
- Ns
- 859
- gaps
- 13
- loci tagged
- 5,531
Annotation quality metrics
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| MLST | 7 | 7 | 100 | |
| Ribosomal MLST | 53 | 53 | 100 | |
| cgMLST | 4090 | 4069 | 99 | |
Analysis
rMLST species identification
| Rank | Taxon | Taxonomy | Support | Matches |
|---|---|---|---|---|
| SPECIES | Burkholderia pseudomallei | Proteobacteria > Betaproteobacteria > Burkholderiales > Burkholderiaceae > Burkholderia > Burkholderia pseudomallei | 100% |
Analysis performed: 2022-11-24
Similar isolates (determined by classification schemes)
No similar isolates at any threshold. Show groups
Schemes and loci
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Tools
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