Full information on isolate SID 3811 (id:71)

Provenance/primary metadata

id
71
isolate
SID 3811
alias
SID 3811/99
country
Bangladesh
continent
Asia
year
1999
species
Burkholderia pseudomallei
source
human
comments
Same patient as SID 3871 and SID 4045
sender
Tyrone Pitt, Central Public Health Laboratory, London, UK
curator
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update history
7 updates show details
date entered
2016-02-01
datestamp
2022-08-12

Publications (2)

  • Abbink FC, Orendi JM, de Beaufort AJ (2001). Mother-to-child transmission of Burkholderia pseudomallei. N Engl J Med 344:1171-2
  • Godoy D, Randle G, Simpson AJ, Aanensen DM, Pitt TL, Kinoshita R, Spratt BG (2003). Multilocus sequence typing and evolutionary relationships among the causative agents of melioidosis and glanders, Burkholderia pseudomallei and Burkholderia mallei. J Clin Microbiol 41:2068-79

Sequence bin

contigs
140
total length
7,288,001 bp
max length
389,761 bp
mean length
52,058 bp
N50
95,987
L50
26
N90
27,696
L90
75
N95
20,094
L95
90
%GC
68.02
Ns
859
gaps
13
loci tagged
5,531

Show sequence bin

Annotation quality metrics

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
MLST77100
Ribosomal MLST5353100
cgMLST4090406999

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Burkholderia pseudomallei Proteobacteria > Betaproteobacteria > Burkholderiales > Burkholderiaceae > Burkholderia > Burkholderia pseudomallei 100%

Analysis performed: 2022-11-24

Similar isolates (determined by classification schemes)

No similar isolates at any threshold. Show groups

Schemes and loci

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