Full information on isolate Ln31348 (id:48)
Provenance/primary metadata
- id
- 48
- isolate
- Ln31348
- alias
- 73
- country
- Malaysia
- continent
- Asia
- species
- Burkholderia pseudomallei
- source
- human
- sender
- Tyrone Pitt, Central Public Health Laboratory, London, UK
- curator
- Auto Tagger
- update history
- 6 updates show details
- date entered
- 2016-02-01
- datestamp
- 2022-01-12
Publication (1)
- Godoy D, Randle G, Simpson AJ, Aanensen DM, Pitt TL, Kinoshita R, Spratt BG (2003). Multilocus sequence typing and evolutionary relationships among the causative agents of melioidosis and glanders, Burkholderia pseudomallei and Burkholderia mallei. J Clin Microbiol 41:2068-79
Sequence bin
- contigs
- 170
- total length
- 7,200,270 bp
- max length
- 321,440 bp
- mean length
- 42,355 bp
- N50
- 78,381
- L50
- 27
- N90
- 20,853
- L90
- 89
- N95
- 14,482
- L95
- 109
- %GC
- 68.19
- Ns
- 1377
- gaps
- 16
- loci tagged
- 5,622
Annotation quality metrics
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| MLST | 7 | 7 | 100 | |
| Ribosomal MLST | 53 | 53 | 100 | |
| cgMLST | 4090 | 4079 | 99 | |
Analysis
rMLST species identification
| Rank | Taxon | Taxonomy | Support | Matches |
|---|---|---|---|---|
| SPECIES | Burkholderia pseudomallei | Proteobacteria > Betaproteobacteria > Burkholderiales > Burkholderiaceae > Burkholderia > Burkholderia pseudomallei | 100% |
Analysis performed: 2022-11-24
Similar isolates (determined by classification schemes)
Some groups only contain this isolate. Show single groups
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group |
|---|---|---|---|---|---|
| Bp_cgc_200 | cgMLST | Single-linkage | 200 | experimental | 5 (8 isolates) |
| Bp_cgc_100 | cgMLST | Single-linkage | 100 | experimental | 5 (8 isolates) |
| Bp_cgc_200 | cgMLST | Single-linkage | 200 | experimental | 5 (8 isolates) |
| Bp_cgc_100 | cgMLST | Single-linkage | 100 | experimental | 5 (8 isolates) |
| Bp_cgc_50 | cgMLST | Single-linkage | 50 | experimental | 5 (1 isolate) |
| Bp_cgc_25 | cgMLST | Single-linkage | 25 | experimental | 5 (1 isolate) |
Schemes and loci
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Tools
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