Full information on isolate Ln31348 (id:48)

Provenance/primary metadata

id
48
isolate
Ln31348
alias
73
country
Malaysia
continent
Asia
species
Burkholderia pseudomallei
source
human
sender
Tyrone Pitt, Central Public Health Laboratory, London, UK
curator
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update history
6 updates show details
date entered
2016-02-01
datestamp
2022-01-12

Publication (1)

  • Godoy D, Randle G, Simpson AJ, Aanensen DM, Pitt TL, Kinoshita R, Spratt BG (2003). Multilocus sequence typing and evolutionary relationships among the causative agents of melioidosis and glanders, Burkholderia pseudomallei and Burkholderia mallei. J Clin Microbiol 41:2068-79

Sequence bin

contigs
170
total length
7,200,270 bp
max length
321,440 bp
mean length
42,355 bp
N50
78,381
L50
27
N90
20,853
L90
89
N95
14,482
L95
109
%GC
68.19
Ns
1377
gaps
16
loci tagged
5,622

Show sequence bin

Annotation quality metrics

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
MLST77100
Ribosomal MLST5353100
cgMLST4090407999

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Burkholderia pseudomallei Proteobacteria > Betaproteobacteria > Burkholderiales > Burkholderiaceae > Burkholderia > Burkholderia pseudomallei 100%

Analysis performed: 2022-11-24

Similar isolates (determined by classification schemes)

Some groups only contain this isolate. Show single groups

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Bp_cgc_200cgMLSTSingle-linkage200experimental5 (8 isolates)
Bp_cgc_100cgMLSTSingle-linkage100experimental5 (8 isolates)
Bp_cgc_200cgMLSTSingle-linkage200experimental5 (8 isolates)
Bp_cgc_100cgMLSTSingle-linkage100experimental5 (8 isolates)
Bp_cgc_50cgMLSTSingle-linkage50experimental5 (1 isolate)
Bp_cgc_25cgMLSTSingle-linkage25experimental5 (1 isolate)

Schemes and loci

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