Full information on isolate Ln29564 (id:47)

Provenance/primary metadata

id
47
isolate
Ln29564
alias
72
country
Malaysia
continent
Asia
species
Burkholderia pseudomallei
source
human
sender
Tyrone Pitt, Central Public Health Laboratory, London, UK
curator
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update history
6 updates show details
date entered
2016-02-01
datestamp
2022-01-12

Publication (1)

  • Godoy D, Randle G, Simpson AJ, Aanensen DM, Pitt TL, Kinoshita R, Spratt BG (2003). Multilocus sequence typing and evolutionary relationships among the causative agents of melioidosis and glanders, Burkholderia pseudomallei and Burkholderia mallei. J Clin Microbiol 41:2068-79

Sequence bin

contigs
172
total length
7,114,551 bp
max length
259,655 bp
mean length
41,364 bp
N50
76,955
L50
32
N90
23,404
L90
95
N95
14,844
L95
114
%GC
68.24
Ns
1094
gaps
10
loci tagged
5,560

Show sequence bin

Annotation quality metrics

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
MLST77100
Ribosomal MLST5353100
cgMLST4090407599

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Burkholderia pseudomallei Proteobacteria > Betaproteobacteria > Burkholderiales > Burkholderiaceae > Burkholderia > Burkholderia pseudomallei 100%

Analysis performed: 2022-11-24

Similar isolates (determined by classification schemes)

No similar isolates at any threshold. Show groups

Schemes and loci

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