Full information on isolate MSHR0559 (id:232)

Provenance/primary metadata

id
232
isolate
MSHR0559
alias
MSHR559
country
Australia
continent
Oceania
region
Northern Territory
year
1998
species
Burkholderia pseudomallei
source
human
sender
Bart Currie, Menzies School of Health Research, Darwin, Australia
curator
Keith Jolley, University of Oxford, UK (E-mail: keith.jolley@biology.ox.ac.uk)
update history
4 updates show details
date entered
2016-02-01
datestamp
2021-12-02

Sequence bin

contigs
202
total length
7,158,169 bp
max length
243,040 bp
mean length
35,437 bp
N50
61,492
L50
37
N90
21,288
L90
111
N95
12,347
L95
133
%GC
68.13
Ns
4720
gaps
75
loci tagged
5,475

Show sequence bin

Annotation quality metrics

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
MLST77100
Ribosomal MLST5353100
cgMLST4090408299

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Burkholderia pseudomallei Proteobacteria > Betaproteobacteria > Burkholderiales > Burkholderiaceae > Burkholderia > Burkholderia pseudomallei 100%

Analysis performed: 2021-07-14

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Bp_cgc_200cgMLSTSingle-linkage200experimental20 (49 isolates)
Bp_cgc_100cgMLSTSingle-linkage100experimental20 (49 isolates)
Bp_cgc_50cgMLSTSingle-linkage50experimental20 (49 isolates)
Bp_cgc_25cgMLSTSingle-linkage25experimental20 (47 isolates)
Bp_cgc_200cgMLSTSingle-linkage200experimental20 (49 isolates)
Bp_cgc_100cgMLSTSingle-linkage100experimental20 (49 isolates)
Bp_cgc_50cgMLSTSingle-linkage50experimental20 (49 isolates)
Bp_cgc_25cgMLSTSingle-linkage25experimental20 (47 isolates)

Schemes and loci

Navigate and select schemes within tree to display allele designations

Tools

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