Full information on isolate MSHR0559 (id:232)
Provenance/primary metadata
- id
- 232
- isolate
- MSHR0559
- alias
- MSHR559
- country
- Australia
- continent
- Oceania
- region
- Northern Territory
- year
- 1998
- species
- Burkholderia pseudomallei
- source
- human
- sender
- Bart Currie, Menzies School of Health Research, Darwin, Australia
- curator
- Keith Jolley, University of Oxford, UK (E-mail: keith.jolley@biology.ox.ac.uk)
- update history
- 4 updates show details
- date entered
- 2016-02-01
- datestamp
- 2021-12-02
Sequence bin
- contigs
- 202
- total length
- 7,158,169 bp
- max length
- 243,040 bp
- mean length
- 35,437 bp
- N50
- 61,492
- L50
- 37
- N90
- 21,288
- L90
- 111
- N95
- 12,347
- L95
- 133
- %GC
- 68.13
- Ns
- 4720
- gaps
- 75
- loci tagged
- 5,475
Annotation quality metrics
Scheme | Scheme loci | Designated loci | Annotation | |
---|---|---|---|---|
Score | Status | |||
MLST | 7 | 7 | 100 | |
Ribosomal MLST | 53 | 53 | 100 | |
cgMLST | 4090 | 4082 | 99 |
Analysis
rMLST species identification
Rank | Taxon | Taxonomy | Support | Matches |
---|---|---|---|---|
SPECIES | Burkholderia pseudomallei | Proteobacteria > Betaproteobacteria > Burkholderiales > Burkholderiaceae > Burkholderia > Burkholderia pseudomallei | 100% |
Analysis performed: 2021-07-14
Similar isolates (determined by classification schemes)
Experimental schemes are subject to change and are not a stable part of the nomenclature.
Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group |
---|---|---|---|---|---|
Bp_cgc_200 | cgMLST | Single-linkage | 200 | experimental | 20 (49 isolates) |
Bp_cgc_100 | cgMLST | Single-linkage | 100 | experimental | 20 (49 isolates) |
Bp_cgc_50 | cgMLST | Single-linkage | 50 | experimental | 20 (49 isolates) |
Bp_cgc_25 | cgMLST | Single-linkage | 25 | experimental | 20 (47 isolates) |
Bp_cgc_200 | cgMLST | Single-linkage | 200 | experimental | 20 (49 isolates) |
Bp_cgc_100 | cgMLST | Single-linkage | 100 | experimental | 20 (49 isolates) |
Bp_cgc_50 | cgMLST | Single-linkage | 50 | experimental | 20 (49 isolates) |
Bp_cgc_25 | cgMLST | Single-linkage | 25 | experimental | 20 (47 isolates) |
Schemes and loci
Navigate and select schemes within tree to display allele designations
Tools
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