Full information on isolate MSHR0449 (id:229)

Provenance/primary metadata

id
229
isolate
MSHR0449
alias
MSHR449
country
Australia
continent
Oceania
region
Northern Territory
year
1996
species
Burkholderia pseudomallei
source
human
sender
Bart Currie, Menzies School of Health Research, Darwin, Australia
curator
Auto Tagger
update history
5 updates show details
date entered
2016-02-01
datestamp
2022-01-12

Sequence bin

contigs
66
total length
7,364,368 bp
max length
1,263,419 bp
mean length
111,582 bp
N50
308,667
L50
5
N90
91,037
L90
26
N95
52,328
L95
32
%GC
67.99
Ns
433
gaps
9
loci tagged
5,611

Show sequence bin

Annotation quality metrics

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
MLST77100
Ribosomal MLST5353100
cgMLST4090408299

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Burkholderia pseudomallei Proteobacteria > Betaproteobacteria > Burkholderiales > Burkholderiaceae > Burkholderia > Burkholderia pseudomallei 100%

Analysis performed: 2021-07-14

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Bp_cgc_200cgMLSTSingle-linkage200experimental21 (7 isolates)
Bp_cgc_100cgMLSTSingle-linkage100experimental21 (7 isolates)
Bp_cgc_50cgMLSTSingle-linkage50experimental21 (7 isolates)
Bp_cgc_25cgMLSTSingle-linkage25experimental21 (7 isolates)
Bp_cgc_200cgMLSTSingle-linkage200experimental21 (7 isolates)
Bp_cgc_100cgMLSTSingle-linkage100experimental21 (7 isolates)
Bp_cgc_50cgMLSTSingle-linkage50experimental21 (7 isolates)
Bp_cgc_25cgMLSTSingle-linkage25experimental21 (7 isolates)

Schemes and loci

Navigate and select schemes within tree to display allele designations

Tools

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