Full information on isolate MSHR0343 (id:225)

Provenance/primary metadata

id
225
isolate
MSHR0343
alias
MSHR343
country
Australia
continent
Oceania
region
Northern Territory
year
1994
species
Burkholderia pseudomallei
source
human
sender
Bart Currie, Menzies School of Health Research, Darwin, Australia
curator
Auto Tagger
update history
5 updates show details
date entered
2016-02-01
datestamp
2022-01-12

Sequence bin

contigs
160
total length
7,185,937 bp
max length
356,294 bp
mean length
44,913 bp
N50
79,712
L50
27
N90
26,881
L90
84
N95
16,072
L95
101
%GC
68.14
Ns
437
gaps
26
loci tagged
5,521

Show sequence bin

Annotation quality metrics

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
MLST77100
Ribosomal MLST5353100
cgMLST4090408099

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Burkholderia pseudomallei Proteobacteria > Betaproteobacteria > Burkholderiales > Burkholderiaceae > Burkholderia > Burkholderia pseudomallei 100%

Analysis performed: 2021-07-14

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Bp_cgc_200cgMLSTSingle-linkage200experimental20 (49 isolates)
Bp_cgc_100cgMLSTSingle-linkage100experimental20 (49 isolates)
Bp_cgc_50cgMLSTSingle-linkage50experimental20 (49 isolates)
Bp_cgc_25cgMLSTSingle-linkage25experimental20 (47 isolates)
Bp_cgc_200cgMLSTSingle-linkage200experimental20 (49 isolates)
Bp_cgc_100cgMLSTSingle-linkage100experimental20 (49 isolates)
Bp_cgc_50cgMLSTSingle-linkage50experimental20 (49 isolates)
Bp_cgc_25cgMLSTSingle-linkage25experimental20 (47 isolates)

Schemes and loci

Navigate and select schemes within tree to display allele designations

Tools

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