Full information on isolate MSHR0287 (id:222)

Provenance/primary metadata

id
222
isolate
MSHR0287
alias
MSHR287
country
Australia
continent
Oceania
region
Northern Territory
year
1994
species
Burkholderia pseudomallei
source
human
sender
Bart Currie, Menzies School of Health Research, Darwin, Australia
curator
Auto Tagger
update history
5 updates show details
date entered
2016-02-01
datestamp
2022-01-12

Sequence bin

contigs
66
total length
7,354,936 bp
max length
822,410 bp
mean length
111,439 bp
N50
245,026
L50
9
N90
79,720
L90
29
N95
50,967
L95
35
%GC
67.96
Ns
155
gaps
11
loci tagged
5,602

Show sequence bin

Annotation quality metrics

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
MLST77100
Ribosomal MLST535298
cgMLST4090408399

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Burkholderia pseudomallei Proteobacteria > Betaproteobacteria > Burkholderiales > Burkholderiaceae > Burkholderia > Burkholderia pseudomallei 100%

Analysis performed: 2021-07-14

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Bp_cgc_200cgMLSTSingle-linkage200experimental19 (5 isolates)
Bp_cgc_100cgMLSTSingle-linkage100experimental19 (5 isolates)
Bp_cgc_50cgMLSTSingle-linkage50experimental19 (5 isolates)
Bp_cgc_25cgMLSTSingle-linkage25experimental19 (5 isolates)
Bp_cgc_200cgMLSTSingle-linkage200experimental19 (5 isolates)
Bp_cgc_100cgMLSTSingle-linkage100experimental19 (5 isolates)
Bp_cgc_50cgMLSTSingle-linkage50experimental19 (5 isolates)
Bp_cgc_25cgMLSTSingle-linkage25experimental19 (5 isolates)

Schemes and loci

Navigate and select schemes within tree to display allele designations

Tools

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