Full information on isolate MSHR0286 (id:221)

Provenance/primary metadata

id
221
isolate
MSHR0286
alias
MSHR286
country
Australia
continent
Oceania
region
Northern Territory
year
1994
species
Burkholderia pseudomallei
source
human
sender
Bart Currie, Menzies School of Health Research, Darwin, Australia
curator
Auto Tagger
update history
5 updates show details
date entered
2016-02-01
datestamp
2022-01-12

Sequence bin

contigs
172
total length
7,386,434 bp
max length
341,831 bp
mean length
42,945 bp
N50
72,351
L50
31
N90
24,141
L90
98
N95
16,328
L95
117
%GC
67.94
Ns
375
gaps
25
loci tagged
5,558

Show sequence bin

Annotation quality metrics

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
MLST77100
Ribosomal MLST535298
cgMLST4090407599

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Burkholderia pseudomallei Proteobacteria > Betaproteobacteria > Burkholderiales > Burkholderiaceae > Burkholderia > Burkholderia pseudomallei 100%

Analysis performed: 2021-07-14

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Bp_cgc_200cgMLSTSingle-linkage200experimental19 (5 isolates)
Bp_cgc_100cgMLSTSingle-linkage100experimental19 (5 isolates)
Bp_cgc_50cgMLSTSingle-linkage50experimental19 (5 isolates)
Bp_cgc_25cgMLSTSingle-linkage25experimental19 (5 isolates)
Bp_cgc_200cgMLSTSingle-linkage200experimental19 (5 isolates)
Bp_cgc_100cgMLSTSingle-linkage100experimental19 (5 isolates)
Bp_cgc_50cgMLSTSingle-linkage50experimental19 (5 isolates)
Bp_cgc_25cgMLSTSingle-linkage25experimental19 (5 isolates)

Schemes and loci

Navigate and select schemes within tree to display allele designations

Tools

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