Full information on isolate MSHR0239 (id:217)
Provenance/primary metadata
- id
- 217
- isolate
- MSHR0239
- alias
- MSHR239
- country
- Australia
- continent
- Oceania
- region
- Queensland
- year
- 1993
- species
- Burkholderia pseudomallei
- source
- human
- sender
- Bart Currie, Menzies School of Health Research, Darwin, Australia
- curator
- Auto Tagger
- update history
- 5 updates show details
- date entered
- 2016-02-01
- datestamp
- 2022-01-12
Sequence bin
- contigs
- 167
- total length
- 7,160,745 bp
- max length
- 433,463 bp
- mean length
- 42,879 bp
- N50
- 84,000
- L50
- 29
- N90
- 23,908
- L90
- 88
- N95
- 13,246
- L95
- 108
- %GC
- 68.19
- Ns
- 1411
- gaps
- 19
- loci tagged
- 5,546
Annotation quality metrics
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| MLST | 7 | 7 | 100 | |
| Ribosomal MLST | 53 | 53 | 100 | |
| cgMLST | 4090 | 4081 | 99 | |
Analysis
rMLST species identification
| Rank | Taxon | Taxonomy | Support | Matches |
|---|---|---|---|---|
| SPECIES | Burkholderia pseudomallei | Proteobacteria > Betaproteobacteria > Burkholderiales > Burkholderiaceae > Burkholderia > Burkholderia pseudomallei | 100% |
Analysis performed: 2021-07-14
Similar isolates (determined by classification schemes)
No similar isolates at any threshold. Show groups
Schemes and loci
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Tools
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