Full information on isolate MSHR0130 (id:215)
Provenance/primary metadata
- id
- 215
- isolate
- MSHR0130
- alias
- MSHR130
- country
- Australia
- continent
- Oceania
- region
- Northern Territory
- year
- 1992
- species
- Burkholderia pseudomallei
- source
- human
- sender
- Bart Currie, Menzies School of Health Research, Darwin, Australia
- curator
- Auto Tagger
- update history
- 5 updates show details
- date entered
- 2016-02-01
- datestamp
- 2022-01-12
Sequence bin
- contigs
- 180
- total length
- 7,249,063 bp
- max length
- 385,277 bp
- mean length
- 40,273 bp
- N50
- 77,563
- L50
- 29
- N90
- 21,629
- L90
- 99
- N95
- 12,974
- L95
- 119
- %GC
- 68.05
- Ns
- 490
- gaps
- 15
- loci tagged
- 5,560
Annotation quality metrics
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| MLST | 7 | 7 | 100 | |
| Ribosomal MLST | 53 | 52 | 98 | |
| cgMLST | 4090 | 4081 | 99 | |
Analysis
rMLST species identification
| Rank | Taxon | Taxonomy | Support | Matches |
|---|---|---|---|---|
| SPECIES | Burkholderia pseudomallei | Proteobacteria > Betaproteobacteria > Burkholderiales > Burkholderiaceae > Burkholderia > Burkholderia pseudomallei | 100% |
Analysis performed: 2021-07-14
Similar isolates (determined by classification schemes)
No similar isolates at any threshold. Show groups
Schemes and loci
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Tools
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