Full information on isolate MSHR0116 (id:213)

Provenance/primary metadata

id
213
isolate
MSHR0116
alias
MSHR116
country
Australia
continent
Oceania
region
Northern Territory
year
1992
species
Burkholderia pseudomallei
source
human
sender
Bart Currie, Menzies School of Health Research, Darwin, Australia
curator
Auto Tagger
update history
7 updates show details
date entered
2016-02-01
datestamp
2022-01-12

Sequence bin

contigs
65
total length
7,358,997 bp
max length
969,539 bp
mean length
113,216 bp
N50
233,647
L50
9
N90
93,969
L90
28
N95
51,662
L95
33
%GC
68.00
Ns
285
gaps
6
loci tagged
5,625

Show sequence bin

Annotation quality metrics

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
MLST77100
Ribosomal MLST5353100
cgMLST4090408499

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Burkholderia pseudomallei Proteobacteria > Betaproteobacteria > Burkholderiales > Burkholderiaceae > Burkholderia > Burkholderia pseudomallei 100%

Analysis performed: 2021-07-14

Similar isolates (determined by classification schemes)

Some groups only contain this isolate. Show single groups

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Bp_cgc_200cgMLSTSingle-linkage200experimental15 (2 isolates)
Bp_cgc_100cgMLSTSingle-linkage100experimental15 (2 isolates)
Bp_cgc_200cgMLSTSingle-linkage200experimental15 (2 isolates)
Bp_cgc_100cgMLSTSingle-linkage100experimental15 (2 isolates)
Bp_cgc_50cgMLSTSingle-linkage50experimental15 (1 isolate)
Bp_cgc_25cgMLSTSingle-linkage25experimental15 (1 isolate)

Schemes and loci

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