Full information on isolate MSHR0116 (id:213)
Provenance/primary metadata
- id
- 213
- isolate
- MSHR0116
- alias
- MSHR116
- country
- Australia
- continent
- Oceania
- region
- Northern Territory
- year
- 1992
- species
- Burkholderia pseudomallei
- source
- human
- sender
- Bart Currie, Menzies School of Health Research, Darwin, Australia
- curator
- Auto Tagger
- update history
- 7 updates show details
- date entered
- 2016-02-01
- datestamp
- 2022-01-12
Sequence bin
- contigs
- 65
- total length
- 7,358,997 bp
- max length
- 969,539 bp
- mean length
- 113,216 bp
- N50
- 233,647
- L50
- 9
- N90
- 93,969
- L90
- 28
- N95
- 51,662
- L95
- 33
- %GC
- 68.00
- Ns
- 285
- gaps
- 6
- loci tagged
- 5,625
Annotation quality metrics
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| MLST | 7 | 7 | 100 | |
| Ribosomal MLST | 53 | 53 | 100 | |
| cgMLST | 4090 | 4084 | 99 | |
Analysis
rMLST species identification
| Rank | Taxon | Taxonomy | Support | Matches |
|---|---|---|---|---|
| SPECIES | Burkholderia pseudomallei | Proteobacteria > Betaproteobacteria > Burkholderiales > Burkholderiaceae > Burkholderia > Burkholderia pseudomallei | 100% |
Analysis performed: 2021-07-14
Similar isolates (determined by classification schemes)
Some groups only contain this isolate. Show single groups
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group |
|---|---|---|---|---|---|
| Bp_cgc_200 | cgMLST | Single-linkage | 200 | experimental | 15 (2 isolates) |
| Bp_cgc_100 | cgMLST | Single-linkage | 100 | experimental | 15 (2 isolates) |
| Bp_cgc_200 | cgMLST | Single-linkage | 200 | experimental | 15 (2 isolates) |
| Bp_cgc_100 | cgMLST | Single-linkage | 100 | experimental | 15 (2 isolates) |
| Bp_cgc_50 | cgMLST | Single-linkage | 50 | experimental | 15 (1 isolate) |
| Bp_cgc_25 | cgMLST | Single-linkage | 25 | experimental | 15 (1 isolate) |
Schemes and loci
Navigate and select schemes within tree to display allele designations
Tools
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