Full information on isolate MSHR0114 (id:212)
Provenance/primary metadata
- id
- 212
- isolate
- MSHR0114
- alias
- MSHR114
- country
- Australia
- continent
- Oceania
- region
- Northern Territory
- year
- 1991
- species
- Burkholderia pseudomallei
- source
- human
- sender
- Bart Currie, Menzies School of Health Research, Darwin, Australia
- curator
- Auto Tagger
- update history
- 5 updates show details
- date entered
- 2016-02-01
- datestamp
- 2022-01-12
Sequence bin
- contigs
- 75
- total length
- 7,314,519 bp
- max length
- 797,689 bp
- mean length
- 97,527 bp
- N50
- 191,430
- L50
- 12
- N90
- 85,680
- L90
- 33
- N95
- 46,846
- L95
- 39
- %GC
- 68.03
- Ns
- 749
- gaps
- 17
- loci tagged
- 5,635
Annotation quality metrics
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| MLST | 7 | 7 | 100 | |
| Ribosomal MLST | 53 | 51 | 96 | |
| cgMLST | 4090 | 4083 | 99 | |
Analysis
rMLST species identification
| Rank | Taxon | Taxonomy | Support | Matches |
|---|---|---|---|---|
| SPECIES | Burkholderia pseudomallei | Proteobacteria > Betaproteobacteria > Burkholderiales > Burkholderiaceae > Burkholderia > Burkholderia pseudomallei | 100% |
Analysis performed: 2022-11-24
Similar isolates (determined by classification schemes)
No similar isolates at any threshold. Show groups
Schemes and loci
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Tools
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