Full information on isolate MSHR0099 (id:211)

Provenance/primary metadata

id
211
isolate
MSHR0099
alias
MSHR99
country
Australia
continent
Oceania
region
Northern Territory
year
1991
species
Burkholderia pseudomallei
source
human
sender
Bart Currie, Menzies School of Health Research, Darwin, Australia
curator
Auto Tagger
update history
5 updates show details
date entered
2016-02-01
datestamp
2022-01-12

Sequence bin

contigs
89
total length
7,221,330 bp
max length
475,948 bp
mean length
81,139 bp
N50
149,471
L50
17
N90
51,493
L90
49
N95
36,183
L95
57
%GC
68.11
Ns
643
gaps
9
loci tagged
5,589

Show sequence bin

Annotation quality metrics

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
MLST77100
Ribosomal MLST5353100
cgMLST4090408499

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Burkholderia pseudomallei Proteobacteria > Betaproteobacteria > Burkholderiales > Burkholderiaceae > Burkholderia > Burkholderia pseudomallei 100%

Analysis performed: 2022-11-24

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Bp_cgc_200cgMLSTSingle-linkage200experimental13 (4 isolates)
Bp_cgc_100cgMLSTSingle-linkage100experimental13 (4 isolates)
Bp_cgc_50cgMLSTSingle-linkage50experimental13 (4 isolates)
Bp_cgc_25cgMLSTSingle-linkage25experimental13 (4 isolates)
Bp_cgc_200cgMLSTSingle-linkage200experimental13 (4 isolates)
Bp_cgc_100cgMLSTSingle-linkage100experimental13 (4 isolates)
Bp_cgc_50cgMLSTSingle-linkage50experimental13 (4 isolates)
Bp_cgc_25cgMLSTSingle-linkage25experimental13 (4 isolates)

Schemes and loci

Navigate and select schemes within tree to display allele designations

Tools

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