Full information on isolate AB2056 (id:20)

Provenance/primary metadata

id
20
isolate
AB2056
country
Kenya
continent
Africa
species
Burkholderia pseudomallei
source
unknown
sender
Tyrone Pitt, Central Public Health Laboratory, London, UK
curator
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update history
5 updates show details
date entered
2016-02-01
datestamp
2022-01-11

Publication (1)

  • Godoy D, Randle G, Simpson AJ, Aanensen DM, Pitt TL, Kinoshita R, Spratt BG (2003). Multilocus sequence typing and evolutionary relationships among the causative agents of melioidosis and glanders, Burkholderia pseudomallei and Burkholderia mallei. J Clin Microbiol 41:2068-79

Sequence bin

contigs
138
total length
7,319,934 bp
max length
271,032 bp
mean length
53,043 bp
N50
107,629
L50
22
N90
30,418
L90
69
N95
17,794
L95
86
%GC
67.96
Ns
1075
gaps
14
loci tagged
5,535

Show sequence bin

Annotation quality metrics

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
MLST77100
Ribosomal MLST535298
cgMLST4090407799

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Burkholderia pseudomallei Proteobacteria > Betaproteobacteria > Burkholderiales > Burkholderiaceae > Burkholderia > Burkholderia pseudomallei 100%

Analysis performed: 2022-11-24

Similar isolates (determined by classification schemes)

No similar isolates at any threshold. Show groups

Schemes and loci

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