Full information on isolate Ln34170 (id:19)

Provenance/primary metadata

id
19
isolate
Ln34170
alias
71
country
Malaysia
continent
Asia
species
Burkholderia pseudomallei
source
human
sender
Tyrone Pitt, Central Public Health Laboratory, London, UK
curator
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update history
7 updates show details
date entered
2016-02-01
datestamp
2022-01-12

Publication (1)

  • Godoy D, Randle G, Simpson AJ, Aanensen DM, Pitt TL, Kinoshita R, Spratt BG (2003). Multilocus sequence typing and evolutionary relationships among the causative agents of melioidosis and glanders, Burkholderia pseudomallei and Burkholderia mallei. J Clin Microbiol 41:2068-79

Sequence bin

contigs
148
total length
7,121,043 bp
max length
348,668 bp
mean length
48,116 bp
N50
87,119
L50
25
N90
26,701
L90
81
N95
18,366
L95
98
%GC
68.25
Ns
923
gaps
13
loci tagged
5,567

Show sequence bin

Annotation quality metrics

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
MLST77100
Ribosomal MLST5353100
cgMLST4090408499

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Burkholderia pseudomallei Proteobacteria > Betaproteobacteria > Burkholderiales > Burkholderiaceae > Burkholderia > Burkholderia pseudomallei 100%

Analysis performed: 2022-11-24

Similar isolates (determined by classification schemes)

No similar isolates at any threshold. Show groups

Schemes and loci

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