Full information on isolate Ln34170 (id:19)
Provenance/primary metadata
- id
- 19
- isolate
- Ln34170
- alias
- 71
- country
- Malaysia
- continent
- Asia
- species
- Burkholderia pseudomallei
- source
- human
- sender
- Tyrone Pitt, Central Public Health Laboratory, London, UK
- curator
- Auto Tagger
- update history
- 7 updates show details
- date entered
- 2016-02-01
- datestamp
- 2022-01-12
Publication (1)
- Godoy D, Randle G, Simpson AJ, Aanensen DM, Pitt TL, Kinoshita R, Spratt BG (2003). Multilocus sequence typing and evolutionary relationships among the causative agents of melioidosis and glanders, Burkholderia pseudomallei and Burkholderia mallei. J Clin Microbiol 41:2068-79
Sequence bin
- contigs
- 148
- total length
- 7,121,043 bp
- max length
- 348,668 bp
- mean length
- 48,116 bp
- N50
- 87,119
- L50
- 25
- N90
- 26,701
- L90
- 81
- N95
- 18,366
- L95
- 98
- %GC
- 68.25
- Ns
- 923
- gaps
- 13
- loci tagged
- 5,567
Annotation quality metrics
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| MLST | 7 | 7 | 100 | |
| Ribosomal MLST | 53 | 53 | 100 | |
| cgMLST | 4090 | 4084 | 99 | |
Analysis
rMLST species identification
| Rank | Taxon | Taxonomy | Support | Matches |
|---|---|---|---|---|
| SPECIES | Burkholderia pseudomallei | Proteobacteria > Betaproteobacteria > Burkholderiales > Burkholderiaceae > Burkholderia > Burkholderia pseudomallei | 100% |
Analysis performed: 2022-11-24
Similar isolates (determined by classification schemes)
No similar isolates at any threshold. Show groups
Schemes and loci
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Tools
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