Full information on isolate 521 (id:133)
Provenance/primary metadata
- id
- 133
- isolate
- 521
- alias
- 9
- country
- Pakistan
- continent
- Asia
- year
- 1988
- species
- Burkholderia pseudomallei
- source
- human
- sender
- Tyrone Pitt, Central Public Health Laboratory, London, UK
- curator
- Keith Jolley, University of Oxford, UK (E-mail: keith.jolley@biology.ox.ac.uk)
- update history
- 4 updates show details
- date entered
- 2016-02-01
- datestamp
- 2021-12-02
Publication (1)
- Godoy D, Randle G, Simpson AJ, Aanensen DM, Pitt TL, Kinoshita R, Spratt BG (2003). Multilocus sequence typing and evolutionary relationships among the causative agents of melioidosis and glanders, Burkholderia pseudomallei and Burkholderia mallei. J Clin Microbiol 41:2068-79
Sequence bin
- contigs
- 1,269
- total length
- 6,868,061 bp
- max length
- 66,257 bp
- mean length
- 5,413 bp
- N50
- 8,040
- L50
- 217
- N90
- 2,297
- L90
- 844
- N95
- 1,693
- L95
- 1,018
- %GC
- 67.88
- Ns
- 3194
- gaps
- 29
- loci tagged
- 4,749
Annotation quality metrics
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| MLST | 7 | 7 | 100 | |
| Ribosomal MLST | 53 | 53 | 100 | |
| cgMLST | 4090 | 3701 | 90 | |
Analysis
rMLST species identification
| Rank | Taxon | Taxonomy | Support | Matches |
|---|---|---|---|---|
| SPECIES | Burkholderia pseudomallei | Proteobacteria > Betaproteobacteria > Burkholderiales > Burkholderiaceae > Burkholderia > Burkholderia pseudomallei | 100% |
Analysis performed: 2022-11-24
Schemes and loci
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