Full information on isolate 521 (id:133)

Provenance/primary metadata

id
133
isolate
521
alias
9
country
Pakistan
continent
Asia
year
1988
species
Burkholderia pseudomallei
source
human
sender
Tyrone Pitt, Central Public Health Laboratory, London, UK
curator
Keith Jolley, University of Oxford, UK (E-mail: keith.jolley@biology.ox.ac.uk)
update history
4 updates show details
date entered
2016-02-01
datestamp
2021-12-02

Publication (1)

  • Godoy D, Randle G, Simpson AJ, Aanensen DM, Pitt TL, Kinoshita R, Spratt BG (2003). Multilocus sequence typing and evolutionary relationships among the causative agents of melioidosis and glanders, Burkholderia pseudomallei and Burkholderia mallei. J Clin Microbiol 41:2068-79

Sequence bin

contigs
1,269
total length
6,868,061 bp
max length
66,257 bp
mean length
5,413 bp
N50
8,040
L50
217
N90
2,297
L90
844
N95
1,693
L95
1,018
%GC
67.88
Ns
3194
gaps
29
loci tagged
4,749

Show sequence bin

Annotation quality metrics

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
MLST77100
Ribosomal MLST5353100
cgMLST4090370190

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Burkholderia pseudomallei Proteobacteria > Betaproteobacteria > Burkholderiales > Burkholderiaceae > Burkholderia > Burkholderia pseudomallei 100%

Analysis performed: 2022-11-24

Schemes and loci

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