Full information on isolate SID 4717 (id:130)
Provenance/primary metadata
- id
- 130
- isolate
- SID 4717
- alias
- SID 4717
- country
- Unknown
- year
- 1999
- species
- Burkholderia pseudomallei
- source
- human
- comments
- Same patient as SID 4935 and SID 4718
- sender
- Tyrone Pitt, Central Public Health Laboratory, London, UK
- curator
- Auto Tagger
- update history
- 5 updates show details
- date entered
- 2016-02-01
- datestamp
- 2022-01-12
Publication (1)
- Godoy D, Randle G, Simpson AJ, Aanensen DM, Pitt TL, Kinoshita R, Spratt BG (2003). Multilocus sequence typing and evolutionary relationships among the causative agents of melioidosis and glanders, Burkholderia pseudomallei and Burkholderia mallei. J Clin Microbiol 41:2068-79
Sequence bin
- contigs
- 144
- total length
- 7,217,767 bp
- max length
- 402,005 bp
- mean length
- 50,124 bp
- N50
- 94,211
- L50
- 25
- N90
- 27,883
- L90
- 75
- N95
- 17,371
- L95
- 92
- %GC
- 68.03
- Ns
- 638
- gaps
- 6
- loci tagged
- 5,576
Annotation quality metrics
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| MLST | 7 | 7 | 100 | |
| Ribosomal MLST | 53 | 53 | 100 | |
| cgMLST | 4090 | 4075 | 99 | |
Analysis
rMLST species identification
| Rank | Taxon | Taxonomy | Support | Matches |
|---|---|---|---|---|
| SPECIES | Burkholderia pseudomallei | Proteobacteria > Betaproteobacteria > Burkholderiales > Burkholderiaceae > Burkholderia > Burkholderia pseudomallei | 100% |
Analysis performed: 2022-11-24
Similar isolates (determined by classification schemes)
No similar isolates at any threshold. Show groups
Schemes and loci
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Tools
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