Full information on isolate SID 4717 (id:130)

Provenance/primary metadata

id
130
isolate
SID 4717
alias
SID 4717
country
Unknown
year
1999
species
Burkholderia pseudomallei
source
human
comments
Same patient as SID 4935 and SID 4718
sender
Tyrone Pitt, Central Public Health Laboratory, London, UK
curator
Auto Tagger
update history
5 updates show details
date entered
2016-02-01
datestamp
2022-01-12

Publication (1)

  • Godoy D, Randle G, Simpson AJ, Aanensen DM, Pitt TL, Kinoshita R, Spratt BG (2003). Multilocus sequence typing and evolutionary relationships among the causative agents of melioidosis and glanders, Burkholderia pseudomallei and Burkholderia mallei. J Clin Microbiol 41:2068-79

Sequence bin

contigs
144
total length
7,217,767 bp
max length
402,005 bp
mean length
50,124 bp
N50
94,211
L50
25
N90
27,883
L90
75
N95
17,371
L95
92
%GC
68.03
Ns
638
gaps
6
loci tagged
5,576

Show sequence bin

Annotation quality metrics

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
MLST77100
Ribosomal MLST5353100
cgMLST4090407599

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Burkholderia pseudomallei Proteobacteria > Betaproteobacteria > Burkholderiales > Burkholderiaceae > Burkholderia > Burkholderia pseudomallei 100%

Analysis performed: 2022-11-24

Similar isolates (determined by classification schemes)

No similar isolates at any threshold. Show groups

Schemes and loci

Navigate and select schemes within tree to display allele designations

Tools

Export:
Analysis: