Full information on isolate D4899/303 (id:13)

Provenance/primary metadata

id
13
isolate
D4899/303
aliases
2002721171; VEN1976
country
Venezuela
continent
South America
species
Burkholderia pseudomallei
source
human
comments
A subculture from this isolate was sent to the CDC, was MLST typed independently and entered in the database under ID 154, Strain Name 2002721171, ST12. This duplicate was removed from the database on 17th Nov 2009
sender
Tyrone Pitt, Central Public Health Laboratory, London, UK
curator
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update history
9 updates show details
date entered
2016-02-01
datestamp
2022-01-12

Publications (2)

  • Gee JE, Gulvik CA, Elrod MG, Batra D, Rowe LA, Sheth M, Hoffmaster AR (2017). Phylogeography of Burkholderia pseudomallei Isolates, Western Hemisphere. Emerg Infect Dis 23:1133-1138
  • Godoy D, Randle G, Simpson AJ, Aanensen DM, Pitt TL, Kinoshita R, Spratt BG (2003). Multilocus sequence typing and evolutionary relationships among the causative agents of melioidosis and glanders, Burkholderia pseudomallei and Burkholderia mallei. J Clin Microbiol 41:2068-79

Sequence bin

contigs
161
total length
7,158,493 bp
max length
190,311 bp
mean length
44,463 bp
N50
91,271
L50
29
N90
23,429
L90
80
N95
14,439
L95
98
%GC
68.13
Ns
501
gaps
10
loci tagged
5,525

Show sequence bin

Annotation quality metrics

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
MLST77100
Ribosomal MLST5353100
cgMLST4090407199

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Burkholderia pseudomallei Proteobacteria > Betaproteobacteria > Burkholderiales > Burkholderiaceae > Burkholderia > Burkholderia pseudomallei 100%

Analysis performed: 2022-11-24

Similar isolates (determined by classification schemes)

No similar isolates at any threshold. Show groups

Schemes and loci

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