Full information on isolate D4899/303 (id:13)
Provenance/primary metadata
- id
- 13
- isolate
- D4899/303
- aliases
- 2002721171; VEN1976
- country
- Venezuela
- continent
- South America
- species
- Burkholderia pseudomallei
- source
- human
- comments
- A subculture from this isolate was sent to the CDC, was MLST typed independently and entered in the database under ID 154, Strain Name 2002721171, ST12. This duplicate was removed from the database on 17th Nov 2009
- sender
- Tyrone Pitt, Central Public Health Laboratory, London, UK
- curator
- Auto Tagger
- update history
- 9 updates show details
- date entered
- 2016-02-01
- datestamp
- 2022-01-12
Publications (2)
- Gee JE, Gulvik CA, Elrod MG, Batra D, Rowe LA, Sheth M, Hoffmaster AR (2017). Phylogeography of Burkholderia pseudomallei Isolates, Western Hemisphere. Emerg Infect Dis 23:1133-1138
- Godoy D, Randle G, Simpson AJ, Aanensen DM, Pitt TL, Kinoshita R, Spratt BG (2003). Multilocus sequence typing and evolutionary relationships among the causative agents of melioidosis and glanders, Burkholderia pseudomallei and Burkholderia mallei. J Clin Microbiol 41:2068-79
Sequence bin
- contigs
- 161
- total length
- 7,158,493 bp
- max length
- 190,311 bp
- mean length
- 44,463 bp
- N50
- 91,271
- L50
- 29
- N90
- 23,429
- L90
- 80
- N95
- 14,439
- L95
- 98
- %GC
- 68.13
- Ns
- 501
- gaps
- 10
- loci tagged
- 5,525
Annotation quality metrics
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| MLST | 7 | 7 | 100 | |
| Ribosomal MLST | 53 | 53 | 100 | |
| cgMLST | 4090 | 4071 | 99 | |
Analysis
rMLST species identification
| Rank | Taxon | Taxonomy | Support | Matches |
|---|---|---|---|---|
| SPECIES | Burkholderia pseudomallei | Proteobacteria > Betaproteobacteria > Burkholderiales > Burkholderiaceae > Burkholderia > Burkholderia pseudomallei | 100% |
Analysis performed: 2022-11-24
Similar isolates (determined by classification schemes)
No similar isolates at any threshold. Show groups
Schemes and loci
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