Full information on isolate PWin_wgs (id:2720)
Provenance/primary metadata
- id
- 2720
- isolate
- PWin_wgs
- country
- Germany
- continent
- Europe
- region
- Munich
- species
- Borrelia bavariensis
- year
- 1987
- source
- human
- detailed source
- skin, EM
- sender
- Volker Fingerle, Bavarian Health and Food Safety Authority, Germany
- curator
- Auto Tagger
- update history
- 14 updates show details
- date entered
- 2020-02-17
- datestamp
- 2023-01-27
Sequence bin
- contigs
- 35
- total length
- 1,308,318 bp
- max length
- 404,510 bp
- mean length
- 37,381 bp
- N50
- 206,236
- L50
- 3
- N90
- 19,269
- L90
- 14
- N95
- 7,898
- L95
- 19
- %GC
- 28.05
- Ns
- 0
- gaps
- 0
- loci tagged
- 814
Analysis
rMLST species identification
| Rank | Taxon | Taxonomy | Support | Matches |
|---|---|---|---|---|
| SPECIES | Borreliella garinii | Spirochaetes > Spirochaetia > Spirochaetales > Borreliaceae > Borreliella > Borreliella garinii | 100% |
Analysis performed: 2022-09-01
Schemes and loci
Navigate and select schemes within tree to display allele designations
Tools
Export:
Analysis: