Full information on isolate Prm7569-11_wgs (id:2717)
Provenance/primary metadata
- id
- 2717
- isolate
- Prm7569-11_wgs
- country
- Russia [Europe]
- continent
- Europe
- region
- Perm krai, Cherdyn
- species
- Borrelia bavariensis
- year
- 2011
- source
- tick
- detailed source
- Ixodes persulcatus
- sender
- Volker Fingerle, Bavarian Health and Food Safety Authority, Germany
- curator
- Auto Tagger
- update history
- 15 updates show details
- date entered
- 2020-02-17
- datestamp
- 2023-01-27
Sequence bin
- contigs
- 82
- total length
- 1,326,003 bp
- max length
- 464,052 bp
- mean length
- 16,171 bp
- N50
- 222,974
- L50
- 2
- N90
- 5,218
- L90
- 21
- N95
- 2,468
- L95
- 39
- %GC
- 27.83
- Ns
- 0
- gaps
- 0
- loci tagged
- 798
Analysis
rMLST species identification
| Rank | Taxon | Taxonomy | Support | Matches |
|---|---|---|---|---|
| SPECIES | Borreliella garinii | Spirochaetes > Spirochaetia > Spirochaetales > Borreliaceae > Borreliella > Borreliella garinii | 100% |
Analysis performed: 2022-09-01
Schemes and loci
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