Full information on isolate Prm7564-11_wgs (id:2716)
Provenance/primary metadata
- id
- 2716
- isolate
- Prm7564-11_wgs
- country
- Russia [Europe]
- continent
- Europe
- region
- Perm krai, Cherdyn
- species
- Borrelia bavariensis
- year
- 2011
- source
- tick
- detailed source
- Ixodes persulcatus
- sender
- Volker Fingerle, Bavarian Health and Food Safety Authority, Germany
- curator
- Auto Tagger
- update history
- 16 updates show details
- date entered
- 2020-02-17
- datestamp
- 2023-01-27
Sequence bin
- contigs
- 51
- total length
- 1,387,681 bp
- max length
- 405,636 bp
- mean length
- 27,210 bp
- N50
- 213,132
- L50
- 3
- N90
- 11,828
- L90
- 16
- N95
- 5,403
- L95
- 26
- %GC
- 27.83
- Ns
- 0
- gaps
- 0
- loci tagged
- 802
Analysis
rMLST species identification
| Rank | Taxon | Taxonomy | Support | Matches |
|---|---|---|---|---|
| SPECIES | Borreliella garinii | Spirochaetes > Spirochaetia > Spirochaetales > Borreliaceae > Borreliella > Borreliella garinii | 100% |
Analysis performed: 2022-09-01
Schemes and loci
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