Full information on isolate PNi_wgs (id:2712)
Provenance/primary metadata
- id
- 2712
- isolate
- PNi_wgs
- country
- Germany
- continent
- Europe
- region
- Halle
- species
- Borrelia bavariensis
- year
- 2000
- source
- human
- detailed source
- skin
- sender
- Volker Fingerle, Bavarian Health and Food Safety Authority, Germany
- curator
- Auto Tagger
- update history
- 14 updates show details
- date entered
- 2020-02-17
- datestamp
- 2023-01-27
Sequence bin
- contigs
- 21
- total length
- 1,236,164 bp
- max length
- 407,886 bp
- mean length
- 58,865 bp
- N50
- 222,881
- L50
- 2
- N90
- 27,007
- L90
- 10
- N95
- 15,477
- L95
- 13
- %GC
- 27.78
- Ns
- 0
- gaps
- 0
- loci tagged
- 991
Analysis
rMLST species identification
| Rank | Taxon | Taxonomy | Support | Matches |
|---|---|---|---|---|
| SPECIES | Borreliella garinii | Spirochaetes > Spirochaetia > Spirochaetales > Borreliaceae > Borreliella > Borreliella garinii | 100% |
Analysis performed: 2022-09-01
Schemes and loci
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